Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003830

Physical Location & Seq

Genomic Coordinates Reverse (-)

51324270 .. 51324758

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTAGACTTCCAGGGCTTCAAAATAGGAGTCGGATTAATTAGGGTTAGGGATTTGTGTCGATTTTCAAGAGGCTTCAGGATTTTGGTTGCGATTCAGGTTGAGATGACTTTTCGTATTGGATTCGATCATTGGAGATATGGATGTGGGTTCCATCTGACCGAGTTCTCTCACATGGCCGACCCTTCCTTTGAGCTTGGCTGCCCTGGCGAGTCAGTCATCGAGCTTGGCTGCGTTATTGACTGCGGTCTCAAGGAGAGCAGGGCAGTTGATACAGAGTCGCTTTGTATTCTTTCTAGCAAGTTGGTGTGGGCTATACGTGTTGACCTCCGCATTCTAGATAATGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

117

Amino Acids

13.16

Weight (kDa)

5.87

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12990 AT3G12990 AT3G12990 AT3G12990 AT3G60500 AT3G60500 AT3G60500 AT3G60500
fragaria_vesca	FvH4_1g30010 FvH4_1g30010
malus_domestica	MD03G1172100.v1.1 MD11G1189800.v1.1
prunus_persica	Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1 Prupe.4G254800_v2.0.a1
pyrus_communis	pycom03g12920
rosa_chinensis	RchiOBHm_Chr2g0134251 RchiOBHm_Chr3g0492251
rosa_laevigata	RLG00000022789
rosa_multiflora	Rmu_sc0000418.1_g000008 Rmu_sc0002530.1_g000013 Rmu_sc0003579.1_g000006
rosa_roxburghii	Rroxscaffold_6G00392470
rosa_rugosa	Rorug02G0315300 Rorug03G0252700
rosa_samantha	Rh2AG367900 Rh2BG374300 Rh2CG351900 Rh2DG391500 Rh3AG302700 Rh3BG338700 Rh3CG335800 Rh3DG337900
rosa_wichuraiana	Rw3G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	246, 331
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	22, 69
AjnI	CCWGG	2 cut(s)	12, 205
AluBI	AGCT	2 cut(s)	196, 226
AluI	AGCT	2 cut(s)	196, 226
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	201, 231
ArsI	GACNNNNNNTTYG	4 cut(s)	15, 47, 173, 205
AseI	ATTAAT	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	188, 218
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	14, 207
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	3 cut(s)	5, 297, 338
BisI	GCNGC	2 cut(s)	202, 232
BlsI	GCNGC	2 cut(s)	203, 233
Bme1390I	CCNGG	2 cut(s)	14, 207
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	2 cut(s)	14, 207
BoxI	GACNNNNGTC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	13, 205
BseBI	CCWGG	2 cut(s)	14, 207
BseDI	CCNNGG	2 cut(s)	13, 205
BseGI	GGATG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	188, 218
BshFI	GGCC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	246, 331
BspANI	GGCC	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	13, 205
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	14, 207
BstBAI	YACGTR	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	2 cut(s)	14, 207
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	12, 205
BstV1I	GCAGC	2 cut(s)	188, 218
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	149
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	18, 75, 179, 196, 201, 226, 231, 314
CviKI_1	RGCY	8 cut(s)	18, 75, 179, 196, 201, 226, 231, 314
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	12, 205
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	141, 176, 317
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	202, 232
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	202, 232
FspBI	CTAG	3 cut(s)	5, 297, 338
GluI	GCNGC	2 cut(s)	202, 232
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	5 cut(s)	30, 94, 123, 212, 278
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	35, 159
Hpy188III	TCNNGA	3 cut(s)	69, 79, 338
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	26, 64, 83, 192, 219, 247
Lsp1109I	GCAGC	2 cut(s)	188, 218
MaeI	CTAG	3 cut(s)	5, 297, 338
MaeII	ACGT	1 cut(s)	319
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	39, 221, 287
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	65, 338, 341
MseI	TTAA	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	14, 207
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	2 cut(s)	14, 207
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	94, 123
PkrI	GCNGC	2 cut(s)	203, 233
PleI	GAGTC	3 cut(s)	38, 220, 286
PpsI	GAGTC	3 cut(s)	38, 220, 286
Ppu21I	YACGTR	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	246
PshBI	ATTAAT	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	12, 205
PspGI	CCWGG	2 cut(s)	12, 205
PspN4I	GGNNCC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	202, 232
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	3 cut(s)	39, 221, 287
ScrFI	CCNGG	2 cut(s)	14, 207
SetI	ASST	5 cut(s)	102, 198, 228, 322, 330
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	2 cut(s)	246, 331
SspMI	CTAG	3 cut(s)	5, 297, 338
StyD4I	CCNGG	2 cut(s)	12, 205
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	61, 126, 222
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	94, 123
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseI	GCWGC	2 cut(s)	201, 231
VspI	ATTAAT	1 cut(s)	38
XbaI	TCTAGA	1 cut(s)	337
XspI	CTAG	3 cut(s)	5, 297, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.