Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006500

Physical Location & Seq

Genomic Coordinates Reverse (-)

61243673 .. 61247365

Gene Structure 3693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGCATGTCCTTCTTGGTCAAGCCTAGTAACTGTCACCACTTATCTTTAACTGCCATGGCAATGTCCTCGAGCTTCTGCCCTCATATTCCTAACCACTTGAGAAGTAGACCCATTTGCTCATTCCCTACAAAACCTCTTTCTCTCTCTCTCAAGGCCTTCTCTTCCCAACCATCCAATGCTTCATTCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATTATGGGTTCTCCAATGGCACAGAACCTTATAAAATCTGGGTGTGACGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTTGCCGATCCTGAAAGTGCTGTTGATGTTGCCCTTGGGGAGCATGGAGCTGTTAGTGGAATGAGTACAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGTTGAAACTTCTAAACTGATTAATGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCGGGCTCAAAGAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGCATGCAATCTTGTTCTTTCCTTTACGTTCATATACTTTTGGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGATACGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTCTCGGAAGGGTTGGTTCTCACTGAGAAAATAGGACTGGACCCCAAAGTACTAGTTGAGGTGGTCTCACAGGGTGCCATTAGCGCACCAATGTACTCACTCAAAGGCCCATCAATGATTCAATCTCTCTACCCTACCGCGTTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTATACAAGGTAGCAAAGTCACATGGCCTTAGCGACGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016491 GO:0016614 GO:0016616 GO:0030267 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

372

Amino Acids

39.45

Weight (kDa)

7.62

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	70 - 209	7.6e-39	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	246 - 365	3.6e-27	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17650 AT1G17650
fragaria_vesca	FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660 FvH4_6g33660
malus_domestica	MD09G1191900.v1.1
prunus_persica	Prupe.3G048100_v2.0.a1 Prupe.3G048100_v2.0.a1
pyrus_communis	pycom09g10840
rosa_chinensis	RchiOBHm_Chr2g0143571
rosa_laevigata	RLG00000020047
rosa_multiflora	Rmu_co8457181.1_g000001 Rmu_sc0005308.1_g000001 Rmu_ssc0000231.1_g000008 Rmu_ssc0000231.1_g000012
rosa_roxburghii	Rroxscaffold_2G00101650
rosa_rugosa	Rorug02G0383900
rosa_samantha	Rh2AG435800 Rh2BG443400 Rh2CG421900 Rh2DG453800
rosa_wichuraiana	Rw2G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	935
AciI	CCGC	2 cut(s)	689, 933
AclWI	GGATC	2 cut(s)	308, 395
AcvI	CACGTG	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	3 cut(s)	460, 846, 890
AfiI	CCNNNNNNNGG	2 cut(s)	566, 730
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	486, 500, 917, 946, 1091, 1099, 1111
AhlI	ACTAGT	1 cut(s)	847
AjiI	CACGTC	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	75, 327, 365, 443, 533, 1022
AluI	AGCT	6 cut(s)	75, 327, 365, 443, 533, 1022
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	2 cut(s)	308, 395
AlwNI	CAGNNNCTG	2 cut(s)	992, 1022
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	156, 901, 1057
ApeKI	GCWGC	6 cut(s)	365, 683, 746, 1016, 1019, 1022
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	2 cut(s)	835, 902
AsuHPI	GGTGA	2 cut(s)	29, 671
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	869
BanII	GRGCYC	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	209
BbvI	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
BccI	CCATC	4 cut(s)	181, 584, 781, 913
BcgI	CGANNNNNNTGC	4 cut(s)	51, 85, 780, 814
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	1 cut(s)	771
BcoDI	GTCTC	1 cut(s)	865
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	3 cut(s)	27, 848, 1117
BfmI	CTRYAG	2 cut(s)	354, 612
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
BlsI	GCNGC	6 cut(s)	367, 685, 748, 1018, 1021, 1024
BmcAI	AGTACT	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	835, 902
BmiI	GGNNCC	3 cut(s)	558, 837, 871
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	377, 800, 958
BmuI	ACTGGG	1 cut(s)	546
BplI	GAGNNNNNCTC	4 cut(s)	845, 877, 958, 990
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	328, 1061
BpuEI	CTTGAG	2 cut(s)	121, 137
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	57, 220, 427, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 730
Bse1I	ACTGG	3 cut(s)	541, 560, 837
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	4 cut(s)	57, 220, 427, 724
BseGI	GGATG	2 cut(s)	173, 484
BseLI	CCNNNNNNNGG	2 cut(s)	566, 730
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	541, 560, 837
BseXI	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	3 cut(s)	158, 903, 1059
BshNI	GGYRCC	1 cut(s)	869
BsiHKCI	CYCGRG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	566, 730
BsmAI	GTCTC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	158, 903, 1059
Bso31I	GGTCTC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	3 cut(s)	313, 400, 771
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	2 cut(s)	689, 933
BspANI	GGCC	3 cut(s)	158, 903, 1059
BspCNI	CTCAG	1 cut(s)	811
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	3 cut(s)	558, 837, 871
BspMAI	CTGCAG	2 cut(s)	358, 616
BspPI	GGATC	2 cut(s)	308, 395
BspQI	GCTCTTC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	541, 560, 837
BssECI	CCNNGG	4 cut(s)	57, 220, 427, 724
BssMI	GATC	3 cut(s)	313, 400, 771
BssT1I	CCWWGG	4 cut(s)	57, 220, 427, 724
Bst4CI	ACNGT	4 cut(s)	35, 286, 490, 743
Bst6I	CTCTTC	2 cut(s)	169, 296
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	5 cut(s)	204, 396, 616, 620, 972
BstDEI	CTNAG	3 cut(s)	328, 819, 1061
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	2 cut(s)	173, 484
BstFNI	CGCG	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	3 cut(s)	316, 403, 774
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	3 cut(s)	313, 400, 771
BstMWI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 878, 1022
BstNSI	RCATGY	2 cut(s)	10, 622
BstSFI	CTRYAG	2 cut(s)	354, 612
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	158, 903, 1059
BtgI	CCRYGG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	173, 484
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	5 cut(s)	204, 396, 616, 620, 972
CaiI	CAGNNNCTG	2 cut(s)	992, 1022
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	2 cut(s)	835, 902
Csp6I	GTAC	3 cut(s)	459, 845, 889
CviQI	GTAC	3 cut(s)	459, 845, 889
DdeI	CTNAG	3 cut(s)	328, 819, 1061
DpnI	GATC	3 cut(s)	315, 402, 773
DpnII	GATC	3 cut(s)	313, 400, 771
DraIII	CACNNNGTG	1 cut(s)	869
Eam1104I	CTCTTC	2 cut(s)	169, 296
EarI	CTCTTC	2 cut(s)	169, 296
Eco130I	CCWWGG	4 cut(s)	57, 220, 427, 724
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	865
Eco47I	GGWCC	1 cut(s)	835
Eco72I	CACGTG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoT14I	CCWWGG	4 cut(s)	57, 220, 427, 724
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	4 cut(s)	57, 220, 427, 724
FbaI	TGATCA	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
FokI	GGATG	2 cut(s)	160, 491
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
FspBI	CTAG	3 cut(s)	27, 848, 1117
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	158, 903, 1059
HhaI	GCGC	1 cut(s)	881
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	2 cut(s)	913, 989
HphI	GGTGA	2 cut(s)	29, 671
Hpy166II	GTNNAC	2 cut(s)	110, 766
Hpy188I	TCNGA	1 cut(s)	802
Hpy188III	TCNNGA	2 cut(s)	404, 714
Hpy8I	GTNNAC	2 cut(s)	110, 766
Hpy99I	CGWCG	1 cut(s)	1070
HpyAV	CCTTC	3 cut(s)	22, 169, 797
HpyCH4III	ACNGT	4 cut(s)	35, 286, 490, 743
HpyCH4IV	ACGT	3 cut(s)	208, 279, 642
HpyCH4V	TGCA	7 cut(s)	335, 356, 368, 614, 622, 1016, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 878, 1022
HpyF3I	CTNAG	3 cut(s)	328, 819, 1061
HpySE526I	ACGT	3 cut(s)	208, 279, 642
HspAI	GCGC	1 cut(s)	879
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	313, 400, 771
LguI	GCTCTTC	1 cut(s)	296
LmnI	GCTCC	3 cut(s)	433, 440, 562
Lsp1109I	GCAGC	6 cut(s)	352, 695, 733, 1009, 1028, 1031
LweI	GCATC	3 cut(s)	377, 800, 958
MaeI	CTAG	3 cut(s)	27, 848, 1117
MaeII	ACGT	3 cut(s)	208, 279, 642
MaeIII	GTNAC	7 cut(s)	29, 35, 275, 280, 379, 659, 1050
MalI	GATC	3 cut(s)	315, 402, 773
MboI	GATC	3 cut(s)	313, 400, 771
MboII	GAAGA	3 cut(s)	156, 313, 599
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	2 cut(s)	197, 231
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	9 cut(s)	79, 93, 147, 358, 547, 724, 847, 960, 1063
MseI	TTAA	2 cut(s)	50, 516
MslI	CAYNNNNRTG	2 cut(s)	62, 773
MspA1I	CMGCKG	1 cut(s)	1022
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	5 cut(s)	362, 395, 539, 878, 1022
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	3 cut(s)	313, 400, 771
NlaIV	GGNNCC	3 cut(s)	558, 837, 871
NmuCI	GTSAC	6 cut(s)	35, 275, 280, 379, 659, 1050
NspI	RCATGY	2 cut(s)	10, 622
PaeI	GCATGC	1 cut(s)	622
PaeR7I	CTCGAG	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	913, 989
PkrI	GCNGC	6 cut(s)	367, 685, 748, 1018, 1021, 1024
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	558, 837, 871
PspPI	GGNCC	2 cut(s)	835, 902
PspXI	VCTCGAGB	1 cut(s)	70
PstI	CTGCAG	2 cut(s)	358, 616
PstNI	CAGNNNCTG	2 cut(s)	992, 1022
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	3 cut(s)	460, 846, 890
RsaNI	GTAC	3 cut(s)	459, 845, 889
RseI	CAYNNNNRTG	2 cut(s)	62, 773
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	50, 516
SatI	GCNGC	6 cut(s)	366, 684, 747, 1017, 1020, 1023
Sau3AI	GATC	3 cut(s)	313, 400, 771
Sau96I	GGNCC	2 cut(s)	835, 902
ScaI	AGTACT	1 cut(s)	846
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	3 cut(s)	377, 800, 958
SfcI	CTRYAG	2 cut(s)	354, 612
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	835
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	62, 773
SmlI	CTYRAG	3 cut(s)	70, 100, 152
SmoI	CTYRAG	3 cut(s)	70, 100, 152
SpeI	ACTAGT	1 cut(s)	847
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	2 cut(s)	197, 231
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	689, 933
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	3 cut(s)	27, 848, 1117
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	4 cut(s)	57, 220, 427, 724
TaaI	ACNGT	4 cut(s)	35, 286, 490, 743
TaiI	ACGT	3 cut(s)	211, 282, 645
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	197, 231
TatI	WGTACW	3 cut(s)	458, 844, 888
TfiI	GAWTC	2 cut(s)	913, 989
Tru1I	TTAA	2 cut(s)	50, 516
Tru9I	TTAA	2 cut(s)	50, 516
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	6 cut(s)	35, 275, 280, 379, 659, 1050
TseI	GCWGC	6 cut(s)	365, 683, 746, 1016, 1019, 1022
Tsp45I	GTSAC	6 cut(s)	35, 275, 280, 379, 659, 1050
TspDTI	ATGAA	6 cut(s)	174, 210, 635, 690, 767, 1044
TspRI	CASTG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	835
VspI	ATTAAT	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	728
XceI	RCATGY	2 cut(s)	10, 622
XhoI	CTCGAG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	3 cut(s)	27, 848, 1117
ZrmI	AGTACT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.