Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

74547330 .. 74551731

Gene Structure 4402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACTGGATGTGGGACACTGCAATTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGCCAGGAAGGGTTGAAGGCTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGATAGTTGTCTGTGAGAACAGAAAGGAATTGCAATATGGAGGACTGGGGAAAGGGTCTCTTTTGAATCTTGATGAGATTACCTATGTCCAAAATGCGGTGAAGAGTTCTACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

187

Amino Acids

20.93

Weight (kDa)

5.04

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	3 - 150	2.4e-21	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	398, 424, 542
AcuI	CTGAAG	3 cut(s)	153, 276, 294
AfaI	GTAC	2 cut(s)	280, 428
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	2 cut(s)	328, 511
AjnI	CCWGG	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	507
ApeKI	GCWGC	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	556
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	398, 422
BlsI	GCNGC	2 cut(s)	399, 423
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	201, 341, 495
Bse3DI	GCAATG	2 cut(s)	411, 416
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	2 cut(s)	411, 416
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	3 cut(s)	201, 341, 495
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	3 cut(s)	398, 424, 542
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	2 cut(s)	411, 416
BsrI	ACTGG	3 cut(s)	201, 341, 495
BssMI	GATC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 348
Csp6I	GTAC	2 cut(s)	279, 427
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	3 cut(s)	315, 332, 397
CviKI_1	RGCY	3 cut(s)	315, 332, 397
CviQI	GTAC	2 cut(s)	279, 427
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	507
Eco57I	CTGAAG	3 cut(s)	153, 276, 294
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	410
FaiI	YATR	7 cut(s)	251, 366, 408, 431, 439, 483, 531
FalI	AAGNNNNNCTT	6 cut(s)	151, 183, 320, 352, 489, 521
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	398, 422
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	398, 422
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	398, 422
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	2 cut(s)	4, 511
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	9, 256, 274
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	5 cut(s)	67, 177, 269, 314, 322
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	7 cut(s)	143, 149, 213, 416, 421, 441, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	181, 337
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	559
MfeI	CAATTG	1 cut(s)	22
MluCI	AATT	7 cut(s)	22, 45, 186, 214, 346, 473, 558
MnlI	CCTC	6 cut(s)	10, 87, 172, 235, 299, 479
MroXI	GAANNNNTTC	1 cut(s)	166
MspA1I	CMGCKG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	4, 511
PkrI	GCNGC	2 cut(s)	399, 423
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	333
RsaI	GTAC	2 cut(s)	280, 428
RsaNI	GTAC	2 cut(s)	279, 427
SatI	GCNGC	2 cut(s)	398, 422
Sau3AI	GATC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	7 cut(s)	21, 169, 227, 280, 294, 310, 530
Sse9I	AATT	7 cut(s)	22, 45, 186, 214, 346, 473, 558
SsiI	CCGC	3 cut(s)	398, 424, 542
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	64
TasI	AATT	7 cut(s)	22, 45, 186, 214, 346, 473, 558
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	4, 511
TscAI	CASTG	2 cut(s)	215, 348
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	273, 407
TspRI	CASTG	2 cut(s)	215, 348
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.