Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

26935037 .. 26935463

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATCGTTGGATTGGGTAACCCTGGAAATAAGTACCATGGAACTAGGCACAATGTTGGTTTTGAAATGATAGATAGTATTTCCAAAACGCAGGGCATTGTGATGAATACAATTCAGTCAAAGGCACTGGTTGGAATATGTCGGTCTTCAGTCCTTGTAACTTTTATTTTCATACTCTTATACGTGTTGGTGTTCATTCAGATTTCTTGGTGTGATCAGTACAGGTTCCATTGGAGAGGTACAAATTTTGGTGTTGAAGGTCAGATTTTGATTATGATTTTACCATTTAAATGTGAGATTGTGGTCAATGTATTTGATTTTATTGATTACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

111

Amino Acids

12.68

Weight (kDa)

7.69

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pept_tRNA_hydro	PF01195	1 - 45	2.3e-13	Peptidyl-tRNA hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	3 cut(s)	35, 221, 241
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	65, 257
AjnI	CCWGG	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	214
BfaI	CTAG	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	22, 37
Bse1I	ACTGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	22, 37
BseNI	ACTGG	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	3, 214
Bsp19I	CCATGG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	22, 37
BssMI	GATC	2 cut(s)	3, 214
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	6, 217
BstMBI	GATC	2 cut(s)	3, 214
BstNI	CCWGG	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	34, 220, 240
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	3 cut(s)	34, 220, 240
DpnI	GATC	2 cut(s)	5, 216
DpnII	GATC	2 cut(s)	3, 214
DraI	TTTAAA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	1 cut(s)	41
FaiI	YATR	5 cut(s)	39, 139, 173, 181, 275
FatI	CATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	214
FspBI	CTAG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	201, 264
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	3, 214
LpnPI	CCDG	5 cut(s)	9, 36, 77, 113, 208
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	17, 157
MalI	GATC	2 cut(s)	5, 216
MboI	GATC	2 cut(s)	3, 214
MboII	GAAGA	1 cut(s)	138
MluCI	AATT	2 cut(s)	111, 244
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	288, 334
MslI	CAYNNNNRTG	2 cut(s)	101, 289
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	3, 214
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	22
PspEI	GGTNACC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	227
RsaI	GTAC	3 cut(s)	35, 221, 241
RsaNI	GTAC	3 cut(s)	34, 220, 240
RseI	CAYNNNNRTG	2 cut(s)	101, 289
SaqAI	TTAA	2 cut(s)	288, 334
Sau3AI	GATC	2 cut(s)	3, 214
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	4 cut(s)	186, 227, 241, 262
SmiI	ATTTAAAT	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	101, 289
Sse9I	AATT	2 cut(s)	111, 244
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	37
SwaI	ATTTAAAT	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	111, 244
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	288, 334
Tru9I	TTAA	2 cut(s)	288, 334
TscAI	CASTG	1 cut(s)	132
TspDTI	ATGAA	3 cut(s)	119, 160, 184
TspRI	CASTG	1 cut(s)	132
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.