Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

19491623 .. 19495073

Gene Structure 3451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGAGATGGATATCTTTCTCTTAGACATCGATACAATCCTCCAGAATGCCAGTTGTCTTCTCTGCTTGTCACAGAGTACTCAAGGAGAGTCATCACAATCAATGCAGCGTGCAGGCCAGAGCCTTATACAAGGTACACCTTTTGTGGGCTGGCAACAATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCACTTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGAAGAAGCAGTGACTTTTCAAATTGTGTATATAAGGCTCTCTATATTCCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

197

Amino Acids

22.48

Weight (kDa)

6.88

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	41 - 115	1.6e-24	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	512
AcuI	CTGAAG	3 cut(s)	312, 435, 453
AfaI	GTAC	2 cut(s)	80, 137
AfiI	CCNNNNNNNGG	2 cut(s)	147, 362
AgsI	TTSAA	2 cut(s)	442, 558
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	107, 535
Asp700I	GAANNNNTTC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	119, 547
BccI	CCATC	2 cut(s)	2, 266
BciVI	GTATCC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	3 cut(s)	108, 512, 536
BlsI	GCNGC	3 cut(s)	109, 513, 537
BmcAI	AGTACT	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	31
BsaBI	GATNNNNATC	2 cut(s)	12, 167
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 362
Bse1I	ACTGG	2 cut(s)	52, 455
Bse3DI	GCAATG	2 cut(s)	525, 530
Bse8I	GATNNNNATC	2 cut(s)	12, 167
BseCI	ATCGAT	1 cut(s)	31
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	2 cut(s)	12, 167
BseLI	CCNNNNNNNGG	2 cut(s)	147, 362
BseMI	GCAATG	2 cut(s)	525, 530
BseNI	ACTGG	2 cut(s)	52, 455
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	119, 547
BsgI	GTGCAG	2 cut(s)	133, 355
BshFI	GGCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	147, 362
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	447
BsrDI	GCAATG	2 cut(s)	525, 530
BsrI	ACTGG	2 cut(s)	52, 455
BssMI	GATC	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	112, 116, 153
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	119, 547
BstV2I	GAAGAC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	118
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	2 cut(s)	367, 553
BtsIMutI	CAGTG	3 cut(s)	367, 462, 553
Cac8I	GCNNGC	3 cut(s)	112, 116, 153
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	79, 136
CviAII	CATG	1 cut(s)	521
CviJI	RGCY	5 cut(s)	118, 124, 151, 511, 575
CviKI_1	RGCY	5 cut(s)	118, 124, 151, 511, 575
CviQI	GTAC	2 cut(s)	79, 136
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	14
Eco57I	CTGAAG	3 cut(s)	312, 435, 453
EcoRV	GATATC	1 cut(s)	14
FaeI	CATG	1 cut(s)	524
FaiI	YATR	7 cut(s)	129, 410, 480, 522, 568, 570, 582
FalI	AAGNNNNNCTT	4 cut(s)	310, 342, 434, 466
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	108, 512, 536
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	3 cut(s)	108, 512, 536
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	3 cut(s)	108, 512, 536
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	524
HinfI	GANTC	2 cut(s)	90, 163
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	138, 421
Hpy188I	TCNGA	3 cut(s)	168, 415, 433
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	138, 421
HpyAV	CCTTC	4 cut(s)	226, 336, 428, 436
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	7 cut(s)	107, 114, 302, 308, 372, 530, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	119, 547
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	70, 548
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	51, 552
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	5 cut(s)	181, 204, 345, 460, 559
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	5 cut(s)	51, 169, 246, 331, 394
MroXI	GAANNNNTTC	1 cut(s)	325
MseI	TTAA	1 cut(s)	592
MspI	CCGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	70, 548
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	109, 513, 537
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	447
RsaI	GTAC	2 cut(s)	80, 137
RsaNI	GTAC	2 cut(s)	79, 136
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	3 cut(s)	108, 512, 536
Sau3AI	GATC	1 cut(s)	168
ScaI	AGTACT	1 cut(s)	80
SchI	GAGTC	1 cut(s)	99
SetI	ASST	6 cut(s)	137, 143, 180, 328, 386, 447
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	181, 204, 345, 460, 559
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	31, 223
TasI	AATT	5 cut(s)	181, 204, 345, 460, 559
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TscAI	CASTG	3 cut(s)	374, 462, 553
TseFI	GTSAC	2 cut(s)	70, 548
TseI	GCWGC	2 cut(s)	107, 535
Tsp45I	GTSAC	2 cut(s)	70, 548
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	3 cut(s)	374, 462, 553
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.