Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

41638663 .. 41641016

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG350400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCCAGTTGTCTTGCCTGCTTGTCACAGAGTACTCAAGGAGGTTTGTAGAAGGTTGCCGGGTTTTTCACCCGCTGAAGTGTTGGATTTTGGTGCTGGCATGGGTTTGGGTTTCTGGTACACCTTTTGTGGGCTGGCAACAATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGATACCGGATGTGGGACACTGCAATTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTTGATGACACCAGAGGTTTTAGCCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGATAGTTGTCTGTGAGAACAGAAAGGAATTGCAATATGGAGGACTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

201

Amino Acids

22.57

Weight (kDa)

5.8

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	40 - 186	1.8e-26	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 506, 532
AcuI	CTGAAG	3 cut(s)	96, 294, 417
AfaI	GTAC	3 cut(s)	33, 119, 536
AfiI	CCNNNNNNNGG	2 cut(s)	129, 344
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	355
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	506, 530
BlsI	GCNGC	2 cut(s)	507, 531
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	60, 425
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	60, 425
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 344
Bse1I	ACTGG	3 cut(s)	5, 449, 603
Bse3DI	GCAATG	2 cut(s)	519, 524
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	425
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	129, 344
BseMI	GCAATG	2 cut(s)	519, 524
BseNI	ACTGG	3 cut(s)	5, 449, 603
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	59, 338
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	129, 344
BsmFI	GGGAC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	72, 506, 532
BspLI	GGNNCC	1 cut(s)	441
BsrDI	GCAATG	2 cut(s)	519, 524
BsrI	ACTGG	3 cut(s)	5, 449, 603
BssMI	GATC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	18, 97, 135
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	58, 423
BstV1I	GCAGC	1 cut(s)	541
BsuI	GTATCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	349, 456
Cac8I	GCNNGC	3 cut(s)	18, 97, 135
Csp6I	GTAC	3 cut(s)	32, 118, 535
CviAII	CATG	2 cut(s)	100, 515
CviJI	RGCY	3 cut(s)	133, 423, 505
CviKI_1	RGCY	3 cut(s)	133, 423, 505
CviQI	GTAC	3 cut(s)	32, 118, 535
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eco57I	CTGAAG	3 cut(s)	96, 294, 417
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	2 cut(s)	103, 518
FaiI	YATR	7 cut(s)	101, 392, 474, 516, 539, 547, 591
FalI	AAGNNNNNCTT	4 cut(s)	292, 324, 428, 460
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	2 cut(s)	99, 514
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	506, 530
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	506, 530
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	506, 530
HapII	CCGG	2 cut(s)	59, 338
Hin1II	CATG	2 cut(s)	103, 518
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	59, 338
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	150, 397
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	5 cut(s)	45, 208, 318, 422, 430
HpyCH4V	TGCA	7 cut(s)	284, 290, 354, 524, 529, 549, 586
Hsp92II	CATG	2 cut(s)	103, 518
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MfeI	CAATTG	1 cut(s)	163
MluCI	AATT	6 cut(s)	163, 186, 327, 355, 454, 581
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	34, 151, 228, 313, 376, 407, 587
MroXI	GAANNNNTTC	1 cut(s)	307
MspA1I	CMGCKG	2 cut(s)	74, 532
MspI	CCGG	2 cut(s)	59, 338
MspR9I	CCNGG	2 cut(s)	60, 425
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	425
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	103, 518
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	507, 531
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	441
RsaI	GTAC	3 cut(s)	33, 119, 536
RsaNI	GTAC	3 cut(s)	32, 118, 535
SatI	GCNGC	2 cut(s)	506, 530
Sau3AI	GATC	1 cut(s)	150
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	60, 425
SetI	ASST	8 cut(s)	45, 56, 125, 162, 310, 368, 418, 441
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	6 cut(s)	163, 186, 327, 355, 454, 581
SsiI	CCGC	3 cut(s)	72, 506, 532
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	58, 423
TaqI	TCGA	1 cut(s)	205
TasI	AATT	6 cut(s)	163, 186, 327, 355, 454, 581
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	356, 456
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	515
TspRI	CASTG	2 cut(s)	356, 456
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.