Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

7082953 .. 7083765

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATTGGCAGAGAGCTCCAAAGAAAAGCGATAGCGGTAGGAACTACTATGACATCCTTGAAGTACCTAAGAATTCTTCACAAGATGATCTGAAAAAGGCTTATAGAAGAGCAGCCATGAAGCACCATCCCGATAAGGGTGGTGATGTAGAAAAGTTCAAAGAGTTGGGCCATGCATACAAGGTTCTGAGCGATCCACAGCAACGTGTCATCTATGACCGGGACGGTGAGGATCAGTTCGGCGAGGACATGTACGGTGAGGACCGGTATGGCAAGGACCAGTACAACGAGGACCAATACGGTGAGTACAAGTACAGCCAGAACAGATACGGTCAGGACTGGTACTGGTACGGTTCGAACCAATACGGTCAGGACTGGTACGGGAATCGGTACGACCAGGGCTGGTACGGCCAGAACCGGTATGGTAAGGAAAAGTATAGCAAGGACCGAGATCAGACTGGCGAGCAAAGGGATGTAGTTAGAGTAATCTGGTCCCTAGATTTTCTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

170

Amino Acids

20.55

Weight (kDa)

5.46

Isoelectric Point (pI)

21.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	15 - 73	2.7e-22	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	188, 240
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	2 cut(s)	205, 249
AgeI	ACCGGT	2 cut(s)	264, 417
AgsI	TTSAA	2 cut(s)	62, 160
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	188, 240
AoxI	GGCC	2 cut(s)	169, 409
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	73
AsiGI	ACCGGT	2 cut(s)	264, 417
AspS9I	GGNCC	6 cut(s)	169, 262, 277, 292, 445, 492
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	4 cut(s)	155, 239, 269, 314
AsuII	TTCGAA	1 cut(s)	356
AvaII	GGWCC	5 cut(s)	262, 277, 292, 445, 492
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	1 cut(s)	497
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	221, 398
Bme18I	GGWCC	5 cut(s)	262, 277, 292, 445, 492
BmgT120I	GGNCC	6 cut(s)	169, 262, 277, 292, 445, 492
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	221, 398
Bpu14I	TTCGAA	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	2 cut(s)	264, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse118I	RCCGGY	2 cut(s)	264, 417
Bse1I	ACTGG	5 cut(s)	280, 344, 350, 380, 463
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	54, 127, 478
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	5 cut(s)	280, 344, 350, 380, 463
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	2 cut(s)	171, 411
BshTI	ACCGGT	2 cut(s)	264, 417
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	220, 265, 418
BslFI	GGGAC	2 cut(s)	236, 478
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	236, 478
BsnI	GGCC	2 cut(s)	171, 411
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	88, 193, 232, 451
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	171, 411
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	2 cut(s)	188, 240
BspQI	GCTCTTC	1 cut(s)	103
BspT104I	TTCGAA	1 cut(s)	356
BsrFI	RCCGGY	2 cut(s)	264, 417
BsrI	ACTGG	5 cut(s)	280, 344, 350, 380, 463
BssAI	RCCGGY	2 cut(s)	264, 417
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	4 cut(s)	88, 193, 232, 451
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	6 cut(s)	227, 257, 302, 332, 353, 368
Bst6I	CTCTTC	1 cut(s)	103
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	69, 188
BstF5I	GGATG	3 cut(s)	54, 127, 478
BstKTI	GATC	4 cut(s)	91, 196, 235, 454
BstMBI	GATC	4 cut(s)	88, 193, 232, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	219, 396
BstV1I	GCAGC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	171, 411
BtsCI	GGATG	3 cut(s)	54, 127, 478
Cac8I	GCNNGC	1 cut(s)	464
Cfr10I	RCCGGY	2 cut(s)	264, 417
Cfr13I	GGNCC	6 cut(s)	169, 262, 277, 292, 445, 492
CspAI	ACCGGT	2 cut(s)	264, 417
CviAII	CATG	3 cut(s)	118, 173, 250
CviJI	RGCY	7 cut(s)	17, 101, 116, 171, 318, 402, 411
CviKI_1	RGCY	7 cut(s)	17, 101, 116, 171, 318, 402, 411
DdeI	CTNAG	2 cut(s)	69, 188
DpnI	GATC	4 cut(s)	90, 195, 234, 453
DpnII	GATC	4 cut(s)	88, 193, 232, 451
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	5 cut(s)	262, 277, 292, 445, 492
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	3 cut(s)	121, 176, 253
FaqI	GGGAC	2 cut(s)	236, 478
FatI	CATG	3 cut(s)	117, 172, 249
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	3 cut(s)	41, 114, 485
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	171, 411
HapII	CCGG	3 cut(s)	220, 265, 418
Hin1II	CATG	3 cut(s)	121, 176, 253
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	220, 265, 418
HphI	GGTGA	4 cut(s)	155, 239, 269, 314
Hpy188I	TCNGA	3 cut(s)	93, 189, 456
Hpy188III	TCNNGA	3 cut(s)	131, 335, 371
HpyCH4III	ACNGT	6 cut(s)	227, 257, 302, 332, 353, 368
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	2 cut(s)	69, 188
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	121, 176, 253
Kzo9I	GATC	4 cut(s)	88, 193, 232, 451
LguI	GCTCTTC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	205
MalI	GATC	4 cut(s)	90, 195, 234, 453
MboI	GATC	4 cut(s)	88, 193, 232, 451
MboII	GAAGA	2 cut(s)	69, 120
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	1 cut(s)	73
MnlI	CCTC	4 cut(s)	223, 238, 253, 283
Mph1103I	ATGCAT	1 cut(s)	178
MspI	CCGG	3 cut(s)	220, 265, 418
MspR9I	CCNGG	2 cut(s)	221, 398
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	408
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	88, 193, 232, 451
NlaIII	CATG	3 cut(s)	121, 176, 253
NlaIV	GGNNCC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	356
PciI	ACATGT	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	385
PinAI	ACCGGT	2 cut(s)	264, 417
PkrI	GCNGC	1 cut(s)	115
PscI	ACATGT	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	6 cut(s)	169, 262, 277, 292, 445, 492
SacI	GAGCTC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	4 cut(s)	88, 193, 232, 451
Sau96I	GGNCC	6 cut(s)	169, 262, 277, 292, 445, 492
ScrFI	CCNGG	2 cut(s)	221, 398
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	4 cut(s)	19, 70, 186, 208
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	5 cut(s)	262, 277, 292, 445, 492
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	2 cut(s)	219, 396
TaaI	ACNGT	6 cut(s)	227, 257, 302, 332, 353, 368
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	356
TaqII	GACCGA	1 cut(s)	462
TasI	AATT	1 cut(s)	73
TatI	WGTACW	3 cut(s)	282, 306, 312
TfiI	GAWTC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	134
VpaK11BI	GGWCC	5 cut(s)	262, 277, 292, 445, 492
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.