Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

4838346 .. 4842197

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGATGATCGGCAAGAGGAGGAGATCACGAAAATGGGGAGGATCGGCCGTGCATCGCGGAAAAGTCGTTTTCCGGCCGGGTCGGGTTGCACGAACTGCAGCCTCCTTCGATCCAAGCACGGGGGCAGCGGCGGAGCAAGGCGATGGCATGTGGCGGTTGGGCGGCCTGGTCCGAGGGCGGTGGAGGGCGGGTCGGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGACGACTAATAATTGAGTTAACTAAGATAAGTGACCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCACTTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGGCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAAAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGTTCTATGGTTTTCTGCTGCAATATGGAGGACTGGGGGGCTCATGGTGAAGAAGAATCTGTAGCAAGAGCATATGATTTGGCAGCACTCAAGTACTGGGGAACATCAACTTCTAAAAAATTTCCGGTGTCTGAATACTTAACATTAAAAGAATACTTGGCCTCTCTAAGAAGAAGAAGCAGTGACTTTTCAAATTGTGTATATAAGCTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTCCTCACCATGATACCACTGATGATAAAGTTACCGTTGAAAGTTCAGAGGCTACTCTTAATAAGCAGCAGCTGTGGTTGATAGTCTGGCCATCTTTTAGAAGTGAAGGTGCTGCAGTGCGTTTGTTTTGGCTTACTCTTGATTGCTGCTTGGTTATAGATGATGGGTTTCATATTGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

335

Amino Acids

37.75

Weight (kDa)

8.16

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	8 cut(s)	60, 131, 134, 157, 165, 181, 191, 542
AclWI	GGATC	2 cut(s)	52, 107
AcoI	YGGCCR	3 cut(s)	48, 77, 911
AcsI	RAATTY	1 cut(s)	686
AcuI	CTGAAG	3 cut(s)	297, 420, 438
AfaI	GTAC	3 cut(s)	424, 662, 809
AfiI	CCNNNNNNNGG	3 cut(s)	122, 347, 790
AgsI	TTSAA	3 cut(s)	472, 759, 863
AjnI	CCWGG	2 cut(s)	168, 276
AluBI	AGCT	2 cut(s)	775, 895
AluI	AGCT	2 cut(s)	775, 895
AlwI	GGATC	2 cut(s)	52, 107
AlwNI	CAGNNNCTG	1 cut(s)	895
AoxI	GGCC	5 cut(s)	48, 77, 166, 726, 911
ApeKI	GCWGC	9 cut(s)	101, 128, 565, 585, 650, 889, 892, 935, 969
ApoI	RAATTY	1 cut(s)	686
Asp700I	GAANNNNTTC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	626, 821
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	815
BbvI	GCAGC	9 cut(s)	113, 140, 572, 577, 662, 901, 904, 922, 956
BccI	CCATC	3 cut(s)	140, 922, 980
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	170, 278
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	81
BfmI	CTRYAG	3 cut(s)	99, 627, 936
BfuI	GTATCC	1 cut(s)	358
BmcAI	AGTACT	2 cut(s)	662, 809
Bme1390I	CCNGG	3 cut(s)	81, 170, 278
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	81, 170, 278
BmrI	ACTGGG	2 cut(s)	610, 673
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	2 cut(s)	610, 673
BoxI	GACNNNNGTC	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	175, 277, 817
BsaWI	WCCGGW	2 cut(s)	340, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 347, 790
Bse1I	ACTGG	3 cut(s)	485, 605, 668
Bse3DI	GCAATG	2 cut(s)	555, 560
BseBI	CCWGG	2 cut(s)	170, 278
BseDI	CCNNGG	3 cut(s)	175, 277, 817
BseGI	GGATG	2 cut(s)	12, 349
BseLI	CCNNNNNNNGG	3 cut(s)	122, 347, 790
BseMI	GCAATG	2 cut(s)	555, 560
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	3 cut(s)	485, 605, 668
BseRI	GAGGAG	3 cut(s)	34, 37, 338
BseX3I	CGGCCG	2 cut(s)	48, 77
BseXI	GCAGC	9 cut(s)	113, 140, 572, 577, 662, 901, 904, 922, 956
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	2 cut(s)	51, 80
BshFI	GGCC	5 cut(s)	50, 79, 168, 728, 913
BsiEI	CGRYCG	2 cut(s)	51, 80
BsiSI	CCGG	4 cut(s)	76, 80, 341, 692
BslFI	GGGAC	2 cut(s)	255, 363
BslI	CCNNNNNNNGG	3 cut(s)	122, 347, 790
BsmFI	GGGAC	2 cut(s)	255, 363
BsnI	GGCC	5 cut(s)	50, 79, 168, 728, 913
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	4 cut(s)	9, 26, 44, 112
BspACI	CCGC	8 cut(s)	60, 131, 134, 157, 165, 181, 191, 542
BspANI	GGCC	5 cut(s)	50, 79, 168, 728, 913
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	2 cut(s)	103, 940
BspPI	GGATC	2 cut(s)	52, 107
BsrDI	GCAATG	2 cut(s)	555, 560
BsrI	ACTGG	3 cut(s)	485, 605, 668
BssECI	CCNNGG	3 cut(s)	175, 277, 817
BssMI	GATC	4 cut(s)	9, 26, 44, 112
BssT1I	CCWWGG	1 cut(s)	817
Bst2UI	CCWGG	2 cut(s)	170, 278
Bst4CI	ACNGT	2 cut(s)	413, 859
BstAPI	GCANNNNNTGC	2 cut(s)	98, 334
BstDEI	CTNAG	3 cut(s)	264, 432, 734
BstF5I	GGATG	2 cut(s)	12, 349
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	4 cut(s)	12, 29, 47, 115
BstMBI	GATC	4 cut(s)	9, 26, 44, 112
BstMCI	CGRYCG	2 cut(s)	51, 80
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 334
BstNI	CCWGG	2 cut(s)	170, 278
BstNSI	RCATGY	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	819
BstSCI	CCNGG	3 cut(s)	79, 168, 276
BstSFI	CTRYAG	3 cut(s)	99, 627, 936
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	9 cut(s)	113, 140, 572, 577, 662, 901, 904, 922, 956
BstV2I	GAAGAC	1 cut(s)	815
BstZI	CGGCCG	2 cut(s)	48, 77
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	5 cut(s)	50, 79, 168, 728, 913
BtgZI	GCGATG	2 cut(s)	41, 159
BtsCI	GGATG	2 cut(s)	12, 349
BtsI	GCAGTG	3 cut(s)	352, 754, 945
BtsIMutI	CAGTG	5 cut(s)	352, 492, 754, 840, 945
CaiI	CAGNNNCTG	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	423, 661, 808
CviAII	CATG	4 cut(s)	151, 551, 611, 833
CviQI	GTAC	3 cut(s)	423, 661, 808
DdeI	CTNAG	3 cut(s)	264, 432, 734
DpnI	GATC	4 cut(s)	11, 28, 46, 114
DpnII	GATC	4 cut(s)	9, 26, 44, 112
EaeI	YGGCCR	3 cut(s)	48, 77, 911
EagI	CGGCCG	2 cut(s)	48, 77
EciI	GGCGGA	1 cut(s)	149
EclXI	CGGCCG	2 cut(s)	48, 77
Eco130I	CCWWGG	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	172
Eco52I	CGGCCG	2 cut(s)	48, 77
Eco57I	CTGAAG	3 cut(s)	297, 420, 438
EcoRII	CCWGG	2 cut(s)	168, 276
EcoT14I	CCWWGG	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	817
FaeI	CATG	4 cut(s)	154, 554, 614, 836
FalI	AAGNNNNNCTT	4 cut(s)	295, 327, 464, 496
FaqI	GGGAC	2 cut(s)	255, 363
FatI	CATG	4 cut(s)	150, 550, 610, 832
FauI	CCCGC	1 cut(s)	184
FauNDI	CATATG	1 cut(s)	640
FokI	GGATG	2 cut(s)	19, 356
FriOI	GRGCYC	1 cut(s)	610
HaeIII	GGCC	5 cut(s)	50, 79, 168, 728, 913
HapII	CCGG	4 cut(s)	76, 80, 341, 692
Hin1II	CATG	4 cut(s)	154, 554, 614, 836
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	1 cut(s)	623
HpaI	GTTAAC	1 cut(s)	261
HpaII	CCGG	4 cut(s)	76, 80, 341, 692
HphI	GGTGA	2 cut(s)	626, 821
Hpy166II	GTNNAC	2 cut(s)	261, 406
Hpy188I	TCNGA	6 cut(s)	176, 198, 400, 418, 700, 871
Hpy188III	TCNNGA	2 cut(s)	30, 962
Hpy8I	GTNNAC	2 cut(s)	261, 406
HpyAV	CCTTC	7 cut(s)	118, 216, 321, 413, 458, 466, 923
HpyCH4III	ACNGT	2 cut(s)	413, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 334
HpyF3I	CTNAG	3 cut(s)	264, 432, 734
Hsp92II	CATG	4 cut(s)	154, 554, 614, 836
KspAI	GTTAAC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	9, 26, 44, 112
LmnI	GCTCC	2 cut(s)	136, 325
Lsp1109I	GCAGC	9 cut(s)	113, 140, 572, 577, 662, 901, 904, 922, 956
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	3 cut(s)	272, 749, 853
MalI	GATC	4 cut(s)	11, 28, 46, 114
MboI	GATC	4 cut(s)	9, 26, 44, 112
MboII	GAAGA	5 cut(s)	629, 632, 750, 753, 815
MhlI	GDGCHC	1 cut(s)	610
MlsI	TGGCCA	1 cut(s)	913
MluCI	AATT	6 cut(s)	252, 330, 490, 686, 760, 1002
MluNI	TGGCCA	1 cut(s)	913
MmeI	TCCRAC	1 cut(s)	176
Mox20I	TGGCCA	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	913
MseI	TTAA	5 cut(s)	260, 707, 713, 804, 882
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	1 cut(s)	913
MspA1I	CMGCKG	2 cut(s)	131, 895
MspI	CCGG	4 cut(s)	76, 80, 341, 692
MspR9I	CCNGG	3 cut(s)	81, 170, 278
MvaI	CCWGG	2 cut(s)	170, 278
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	98, 334
NciI	CCSGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	4 cut(s)	9, 26, 44, 112
NlaIII	CATG	4 cut(s)	154, 554, 614, 836
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	272, 749
NspI	RCATGY	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	623
PshAI	GACNNNNGTC	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	168, 276
PspGI	CCWGG	2 cut(s)	168, 276
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	2 cut(s)	103, 940
PstNI	CAGNNNCTG	1 cut(s)	895
PvuII	CAGCTG	1 cut(s)	895
RsaI	GTAC	3 cut(s)	424, 662, 809
RsaNI	GTAC	3 cut(s)	423, 661, 808
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	5 cut(s)	260, 707, 713, 804, 882
Sau3AI	GATC	4 cut(s)	9, 26, 44, 112
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	2 cut(s)	662, 809
ScrFI	CCNGG	3 cut(s)	81, 170, 278
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	3 cut(s)	99, 627, 936
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	6 cut(s)	252, 330, 490, 686, 760, 1002
SsiI	CCGC	8 cut(s)	60, 131, 134, 157, 165, 181, 191, 542
StyD4I	CCNGG	3 cut(s)	79, 168, 276
StyI	CCWWGG	1 cut(s)	817
TaaI	ACNGT	2 cut(s)	413, 859
TaqI	TCGA	2 cut(s)	111, 213
TasI	AATT	6 cut(s)	252, 330, 490, 686, 760, 1002
TatI	WGTACW	2 cut(s)	660, 807
TauI	GCSGC	3 cut(s)	134, 168, 544
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	5 cut(s)	260, 707, 713, 804, 882
Tru9I	TTAA	5 cut(s)	260, 707, 713, 804, 882
TscAI	CASTG	5 cut(s)	359, 492, 754, 847, 945
TseFI	GTSAC	2 cut(s)	272, 749
TseI	GCWGC	9 cut(s)	101, 128, 565, 585, 650, 889, 892, 935, 969
Tsp45I	GTSAC	2 cut(s)	272, 749
TspDTI	ATGAA	3 cut(s)	417, 551, 983
TspRI	CASTG	5 cut(s)	359, 492, 754, 847, 945
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	686
XceI	RCATGY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	310
ZrmI	AGTACT	2 cut(s)	662, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.