Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

28761166 .. 28763281

Gene Structure 2116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCAGTTGTCTTGCCTGCTTGTCACAGAGTACTCAAGGAGGTTTGTAGAAGGTTGCCGGGTTTTTCACCCGCTGAAGTGTTGGATTTTGGTGCTGGCATGGGTTTGGCTTTCTGGCCAGAGCCTTATACAAGGTACACCTTTTGTGGGTTGGCAACAATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCAATTTGGATACCTCAAACACTTCTACAACATCTCGTATATCTGAAGTGGATGACACCAGAGGTTTTAGCCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGTTAGTATTGGCATTAGAGGCAGGCGTCAAATTGTTGGACATATCCAATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

208

Amino Acids

23.3

Weight (kDa)

5.39

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	32 - 191	1.1e-27	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 524, 550
AcoI	YGGCCR	1 cut(s)	116
AcuI	CTGAAG	3 cut(s)	96, 312, 435
AcyI	GRCGYC	1 cut(s)	597
AfaI	GTAC	3 cut(s)	33, 137, 554
AfiI	CCNNNNNNNGG	2 cut(s)	147, 362
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	441
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	547
Asp700I	GAANNNNTTC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	443
BciVI	GTATCC	1 cut(s)	373
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	2 cut(s)	198, 625
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	524, 548
BlsI	GCNGC	2 cut(s)	525, 549
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	60, 443
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	60, 443
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 362
Bse1I	ACTGG	2 cut(s)	5, 467
Bse3DI	GCAATG	2 cut(s)	537, 542
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	364, 427
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	147, 362
BseMI	GCAATG	2 cut(s)	537, 542
BseNI	ACTGG	2 cut(s)	5, 467
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	559
BshFI	GGCC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	59, 356
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	147, 362
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	3 cut(s)	72, 524, 550
BspANI	GGCC	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	537, 542
BsrI	ACTGG	2 cut(s)	5, 467
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	18, 97, 595
BstF5I	GGATG	2 cut(s)	364, 427
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 590
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	58, 441
BstV1I	GCAGC	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	364, 427
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	367, 474
Cac8I	GCNNGC	3 cut(s)	18, 97, 595
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	3 cut(s)	32, 136, 553
CviAII	CATG	2 cut(s)	100, 533
CviJI	RGCY	5 cut(s)	110, 118, 124, 441, 523
CviKI_1	RGCY	5 cut(s)	110, 118, 124, 441, 523
CviQI	GTAC	3 cut(s)	32, 136, 553
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	116
Eco57I	CTGAAG	3 cut(s)	96, 312, 435
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	103, 536
FaiI	YATR	8 cut(s)	101, 129, 410, 492, 534, 557, 565, 614
FalI	AAGNNNNNCTT	4 cut(s)	310, 342, 446, 478
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	99, 532
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	524, 548
FokI	GGATG	2 cut(s)	371, 434
Fsp4HI	GCNGC	2 cut(s)	524, 548
FspBI	CTAG	2 cut(s)	198, 625
GluI	GCNGC	2 cut(s)	524, 548
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	2 cut(s)	59, 356
HgaI	GACGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	2 cut(s)	103, 536
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	59, 356
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	168, 415
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	5 cut(s)	45, 226, 336, 440, 448
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4V	TGCA	6 cut(s)	302, 308, 372, 542, 547, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 590
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	2 cut(s)	103, 536
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	198, 625
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MfeI	CAATTG	2 cut(s)	181, 619
MlsI	TGGCCA	1 cut(s)	118
MluCI	AATT	7 cut(s)	181, 204, 345, 373, 472, 602, 619
MluNI	TGGCCA	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	63, 588
MnlI	CCTC	7 cut(s)	34, 169, 246, 331, 394, 425, 583
Mox20I	TGGCCA	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	118
Msp20I	TGGCCA	1 cut(s)	118
MspA1I	CMGCKG	2 cut(s)	74, 550
MspI	CCGG	2 cut(s)	59, 356
MspR9I	CCNGG	2 cut(s)	60, 443
MunI	CAATTG	2 cut(s)	181, 619
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	349, 590
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	103, 536
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	525, 549
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	459
RsaI	GTAC	3 cut(s)	33, 137, 554
RsaNI	GTAC	3 cut(s)	32, 136, 553
SatI	GCNGC	2 cut(s)	524, 548
Sau3AI	GATC	1 cut(s)	168
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	60, 443
SetI	ASST	9 cut(s)	45, 56, 137, 143, 180, 328, 386, 436, 459
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	7 cut(s)	181, 204, 345, 373, 472, 602, 619
SsiI	CCGC	3 cut(s)	72, 524, 550
SspMI	CTAG	2 cut(s)	198, 625
StyD4I	CCNGG	2 cut(s)	58, 441
TaaI	ACNGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	223
TasI	AATT	7 cut(s)	181, 204, 345, 373, 472, 602, 619
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	2 cut(s)	374, 474
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	374, 474
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	2 cut(s)	198, 625
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.