Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

32296167 .. 32299799

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGAGATGGATATCTTTCTCTTAGACATCGATACAATCCTCCAGAATGCCAGTTGTCTAGCCTGCTTGTCACAGAGTACTCAAGGAGGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAATTGAGTTAACTAAGATAAGTGACCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCAATTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGCCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGAAGAAGCAGTGACTTTTCAAATTGTGTATATAAGGCTCTCTATATTCCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

171

Amino Acids

19.36

Weight (kDa)

5.79

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	434
AcuI	CTGAAG	3 cut(s)	189, 312, 330
AfaI	GTAC	2 cut(s)	80, 316
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	364, 480
AjnI	CCWGG	2 cut(s)	168, 351
ApeKI	GCWGC	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	170, 353
BciVI	GTATCC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	434, 458
BlsI	GCNGC	2 cut(s)	435, 459
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	170, 353
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	170, 353
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	67
Bsa29I	ATCGAT	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	52, 377
Bse3DI	GCAATG	2 cut(s)	447, 452
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	170, 353
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	2 cut(s)	447, 452
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	52, 377
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	447, 452
BsrI	ACTGG	2 cut(s)	52, 377
BssECI	CCNNGG	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	170, 353
Bst4CI	ACNGT	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	23, 156, 324
BstF5I	GGATG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	170, 353
BstSCI	CCNGG	2 cut(s)	168, 351
BstV1I	GCAGC	1 cut(s)	469
Bsu15I	ATCGAT	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	2 cut(s)	244, 475
BtsIMutI	CAGTG	3 cut(s)	244, 384, 475
Cac8I	GCNNGC	1 cut(s)	65
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	79, 315
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	4 cut(s)	63, 351, 433, 497
CviKI_1	RGCY	4 cut(s)	63, 351, 433, 497
CviQI	GTAC	2 cut(s)	79, 315
DdeI	CTNAG	3 cut(s)	23, 156, 324
Eco32I	GATATC	1 cut(s)	14
Eco57I	CTGAAG	3 cut(s)	189, 312, 330
EcoRII	CCWGG	2 cut(s)	168, 351
EcoRV	GATATC	1 cut(s)	14
FaeI	CATG	1 cut(s)	446
FaiI	YATR	6 cut(s)	287, 402, 444, 490, 492, 504
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 356, 388
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	434, 458
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	434, 458
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	2 cut(s)	434, 458
GsuI	CTGGAG	1 cut(s)	27
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaI	GTTAAC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	153, 298
Hpy188I	TCNGA	2 cut(s)	292, 310
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	153, 298
HpyAV	CCTTC	5 cut(s)	108, 213, 305, 350, 358
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	5 cut(s)	179, 185, 249, 452, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	3 cut(s)	23, 156, 324
Hsp92II	CATG	1 cut(s)	446
KspAI	GTTAAC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	3 cut(s)	70, 164, 470
MboII	GAAGA	1 cut(s)	474
MluCI	AATT	5 cut(s)	144, 222, 250, 382, 481
MnlI	CCTC	6 cut(s)	51, 81, 128, 208, 271, 335
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	2 cut(s)	152, 514
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	170, 353
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	170, 353
MwoI	GCNNNNNNNGC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	3 cut(s)	70, 164, 470
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	435, 459
Psp6I	CCWGG	2 cut(s)	168, 351
PspGI	CCWGG	2 cut(s)	168, 351
PspN4I	GGNNCC	1 cut(s)	369
RsaI	GTAC	2 cut(s)	80, 316
RsaNI	GTAC	2 cut(s)	79, 315
SaqAI	TTAA	2 cut(s)	152, 514
SatI	GCNGC	2 cut(s)	434, 458
ScaI	AGTACT	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	170, 353
SetI	ASST	6 cut(s)	205, 263, 316, 330, 346, 369
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	144, 222, 250, 382, 481
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	168, 351
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	31, 105
TasI	AATT	5 cut(s)	144, 222, 250, 382, 481
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	152, 514
Tru9I	TTAA	2 cut(s)	152, 514
TscAI	CASTG	3 cut(s)	251, 384, 475
TseFI	GTSAC	3 cut(s)	70, 164, 470
TseI	GCWGC	1 cut(s)	457
Tsp45I	GTSAC	3 cut(s)	70, 164, 470
TspDTI	ATGAA	2 cut(s)	309, 443
TspRI	CASTG	3 cut(s)	251, 384, 475
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.