Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

10465170 .. 10477090

Gene Structure 11921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAATGCTTCTGACACAACAGATCAATTTCTTTACGAATCTATAAGTGGCCAATCCTCCTGGATAATCTTCATGTTTAAGTACTCAAGGAGGTTTGTAGAAGGTTGCCGGGTTTTTCACCCGCTGAAGTGTTGGATTTTGGTGCTGGCATGGGTTTGGCTTTCTGGGCACTATGAGAAGCCAGAGCCTTATACAAGGTACACCTTTTGTGGGCTGGCAACAATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACTGGATGTGGGACACTGCAATTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGCCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGATACAAGAGTATGTTGAAGCTGAAACCTTCTTTAAATTCTGCAGGAAAGGGTCTCTTTTGAATCTTGATGAGATTACCTATGTCCAAAATGCGGTGAAGAGTTCTACAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

260

Amino Acids

29.88

Weight (kDa)

5.42

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	58 - 224	8.9e-27	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	122, 620, 646, 761
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	4 cut(s)	146, 375, 498, 516
AfaI	GTAC	4 cut(s)	83, 200, 502, 650
AfiI	CCNNNNNNNGG	2 cut(s)	210, 760
AgsI	TTSAA	3 cut(s)	550, 686, 730
AjnI	CCWGG	2 cut(s)	59, 537
AluBI	AGCT	1 cut(s)	689
AluI	AGCT	1 cut(s)	689
Alw26I	GTCTC	1 cut(s)	726
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	110, 775
BaeGI	GKGCMC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	662, 695
BalI	TGGCCA	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	2 cut(s)	61, 539
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	709
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	2 cut(s)	620, 644
BlsI	GCNGC	2 cut(s)	621, 645
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	61, 110, 539
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	61, 110, 539
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 760
Bse1I	ACTGG	2 cut(s)	423, 563
Bse3DI	GCAATG	2 cut(s)	633, 638
Bse8I	GATNNNNATC	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	61, 539
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	210, 760
BseMI	GCAATG	2 cut(s)	633, 638
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	2 cut(s)	423, 563
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	655
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	210, 760
BsmAI	GTCTC	1 cut(s)	726
BsmFI	GGGAC	1 cut(s)	441
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	22, 231
BspACI	CCGC	4 cut(s)	122, 620, 646, 761
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	726
BsrDI	GCAATG	2 cut(s)	633, 638
BsrI	ACTGG	2 cut(s)	423, 563
BssMI	GATC	2 cut(s)	22, 231
Bst2UI	CCWGG	2 cut(s)	61, 539
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	761
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	147, 216
BstDEI	CTNAG	1 cut(s)	510
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	2 cut(s)	25, 234
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	2 cut(s)	22, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 412
BstNI	CCWGG	2 cut(s)	61, 539
BstSCI	CCNGG	3 cut(s)	59, 108, 537
BstSFI	CTRYAG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	655
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	430, 570
Cac8I	GCNNGC	2 cut(s)	147, 216
Csp6I	GTAC	4 cut(s)	82, 199, 501, 649
CviAII	CATG	3 cut(s)	73, 150, 629
CviJI	RGCY	8 cut(s)	51, 160, 181, 187, 214, 537, 619, 689
CviKI_1	RGCY	8 cut(s)	51, 160, 181, 187, 214, 537, 619, 689
CviQI	GTAC	4 cut(s)	82, 199, 501, 649
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	2 cut(s)	24, 233
DpnII	GATC	2 cut(s)	22, 231
DraI	TTTAAA	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	761
EarI	CTCTTC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	726
Eco57I	CTGAAG	4 cut(s)	146, 375, 498, 516
EcoRII	CCWGG	2 cut(s)	59, 537
FaeI	CATG	3 cut(s)	76, 153, 632
FalI	AAGNNNNNCTT	6 cut(s)	373, 405, 542, 574, 708, 740
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	3 cut(s)	72, 149, 628
FauI	CCCGC	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	620, 644
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	2 cut(s)	620, 644
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	620, 644
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	3 cut(s)	76, 153, 632
HinfI	GANTC	3 cut(s)	38, 226, 730
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	110, 775
Hpy166II	GTNNAC	2 cut(s)	201, 484
Hpy188I	TCNGA	4 cut(s)	13, 231, 478, 496
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	2 cut(s)	201, 484
HpyAV	CCTTC	7 cut(s)	95, 289, 399, 491, 536, 544, 706
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	7 cut(s)	365, 371, 435, 638, 643, 663, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 412
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	76, 153, 632
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	22, 231
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	261
MalI	GATC	2 cut(s)	24, 233
MboI	GATC	2 cut(s)	22, 231
MboII	GAAGA	2 cut(s)	61, 778
MfeI	CAATTG	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	8 cut(s)	26, 244, 267, 408, 436, 568, 704, 777
MluNI	TGGCCA	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	67, 84, 232, 309, 394, 457, 521
Mox20I	TGGCCA	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	2 cut(s)	78, 702
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	124, 646
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	61, 110, 539
MunI	CAATTG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	61, 539
MwoI	GCNNNNNNNGC	2 cut(s)	166, 412
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	22, 231
NlaIII	CATG	3 cut(s)	76, 153, 632
NlaIV	GGNNCC	1 cut(s)	555
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	38, 226, 730
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	621, 645
Psp6I	CCWGG	2 cut(s)	59, 537
PspGI	CCWGG	2 cut(s)	59, 537
PspN4I	GGNNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	713
RsaI	GTAC	4 cut(s)	83, 200, 502, 650
RsaNI	GTAC	4 cut(s)	82, 199, 501, 649
SaqAI	TTAA	2 cut(s)	78, 702
SatI	GCNGC	2 cut(s)	620, 644
Sau3AI	GATC	2 cut(s)	22, 231
ScaI	AGTACT	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	61, 110, 539
SduI	GDGCHC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	8 cut(s)	26, 244, 267, 408, 436, 568, 704, 777
SsiI	CCGC	4 cut(s)	122, 620, 646, 761
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	59, 108, 537
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	286
TasI	AATT	8 cut(s)	26, 244, 267, 408, 436, 568, 704, 777
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	3 cut(s)	38, 226, 730
Tru1I	TTAA	2 cut(s)	78, 702
Tru9I	TTAA	2 cut(s)	78, 702
TscAI	CASTG	2 cut(s)	437, 570
TseI	GCWGC	1 cut(s)	643
TspDTI	ATGAA	4 cut(s)	17, 61, 495, 629
TspRI	CASTG	2 cut(s)	437, 570
XapI	RAATTY	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	1 cut(s)	261
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.