Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

7086316 .. 7088870

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGTATCGGGTCGGAGTCGGGTAGCGGGAGCGGCTCGGACGACTCGTCGTCTTCGGGAGGATGGAGCGTGGCGCGCGGGTTAGTGGTGAAGACGGTGGTTTTGATCGGCGGAGCTCTGTTGCTGAAGCGACTGACCAAGTCCACAACCCGGTGGGACCACGCCGGCCACGTCACCCGCTCCCTCTCCGGCGAGAAGTTCTCCAAGGACCAAGCCGCCAGGGATCCTGACCACTACTTCAACATCAGAATGAGTAGTTGCCCTGCAGCTGAGATGGTGGACGGTTCTAAAGTTTTGTACTTTGAACAAGCTTTTTGGAGGAGTCCTAAGAAGCCATTTAGGCAGAGATTTTATATGGTGAAGCCTTGCCCGAAAGAGTTGAAGTGTGATGTTGAGGTAAGCTCGTATGCAATTAGGGATGCGGAGGAGTACAAGAATTTTTGTGATCGCTCAAAGGACCAGCGCCCCCTGCCTGAAGAAGTTATCGGGGACATTGCAGAGCATTTGACAACAGTGCATCTTAAACGTTGTGAGCGTGGAAAACGCTGCTTATATGAAGGGTCAACTCCACCTGCCAGTTTCCCTAATTCATGGAATGGAGCATCATACTGTACTTCGGAACTTGCAATTCTTAAAAACAATGAGATACATTCATGGGATAGGGGATATAACGATGAAGGAAATCAAGTTTGGGGACCAAAGGAAGGTCCGTATGAATTCAAGCCCGCACCTGCCTCCAGTATGAATGACATGTTTTCTTCTTTAAATTTTCCTATTCAGCAGTCTATTGAGAAAAGAATAGAGGGTTCATTTGTCTTGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

275

Amino Acids

30.78

Weight (kDa)

7.0

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CpeT	PF06206	58 - 241	5.1e-44	CpeT/CpcT family (DUF1001)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	580, 739
Acc36I	ACCTGC	2 cut(s)	580, 739
AccBSI	CCGCTC	2 cut(s)	33, 180
AccII	CGCG	2 cut(s)	76, 78
AciI	CCGC	8 cut(s)	27, 33, 78, 111, 178, 216, 422, 726
AclI	AACGTT	1 cut(s)	526
AclWI	GGATC	2 cut(s)	218, 231
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	3 cut(s)	436, 716, 766
AcuI	CTGAAG	2 cut(s)	146, 495
AfaI	GTAC	3 cut(s)	299, 431, 613
AfiI	CCNNNNNNNGG	2 cut(s)	150, 704
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	4 cut(s)	241, 305, 382, 721
AhdI	GACNNNNNGTC	2 cut(s)	46, 49
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	673, 705
AluBI	AGCT	4 cut(s)	116, 269, 311, 402
AluI	AGCT	4 cut(s)	116, 269, 311, 402
Alw21I	GWGCWC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	218, 231
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	266, 546
ApoI	RAATTY	3 cut(s)	436, 716, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AspLEI	GCGC	3 cut(s)	76, 78, 465
AspS9I	GGNCC	5 cut(s)	157, 208, 457, 695, 707
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	100, 166, 370
AvaII	GGWCC	5 cut(s)	157, 208, 457, 695, 707
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	45, 98
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	278, 533
BccI	CCATC	2 cut(s)	57, 268
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	466
BfuAI	ACCTGC	2 cut(s)	580, 739
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	4 cut(s)	34, 216, 267, 547
BlsI	GCNGC	4 cut(s)	35, 217, 268, 548
Bme1390I	CCNGG	2 cut(s)	151, 220
Bme18I	GGWCC	5 cut(s)	157, 208, 457, 695, 707
BmeRI	GACNNNNNGTC	2 cut(s)	46, 49
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	157, 208, 457, 695, 707
BmiI	GGNNCC	3 cut(s)	158, 225, 696
BmrFI	CCNGG	2 cut(s)	151, 220
BmsI	GCATC	3 cut(s)	409, 526, 611
BpiI	GAAGAC	2 cut(s)	45, 98
BplI	GAGNNNNNCTC	4 cut(s)	185, 217, 386, 418
BpmI	CTGGAG	1 cut(s)	721
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	204, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 704
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	576, 738
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	204, 219
BseGI	GGATG	2 cut(s)	68, 424
BseLI	CCNNNNNNNGG	2 cut(s)	150, 704
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	576, 738
BsePI	GCGCGC	1 cut(s)	74
BseRI	GAGGAG	2 cut(s)	334, 440
BseXI	GCAGC	2 cut(s)	278, 533
Bsh1236I	CGCG	2 cut(s)	76, 78
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	151, 165, 189
BslFI	GGGAC	3 cut(s)	170, 503, 708
BslI	CCNNNNNNNGG	2 cut(s)	150, 704
BsmFI	GGGAC	3 cut(s)	170, 503, 708
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	105, 223, 445
BspACI	CCGC	8 cut(s)	27, 33, 78, 111, 178, 216, 422, 726
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	76, 78
BspLI	GGNNCC	3 cut(s)	158, 225, 696
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	2 cut(s)	580, 739
BspPI	GGATC	2 cut(s)	218, 231
BsrBI	CCGCTC	2 cut(s)	33, 180
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	576, 738
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	204, 219
BssHII	GCGCGC	1 cut(s)	74
BssMI	GATC	3 cut(s)	105, 223, 445
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	97, 284, 514, 611
BstC8I	GCNNGC	3 cut(s)	76, 166, 726
BstDEI	CTNAG	2 cut(s)	270, 327
BstF5I	GGATG	2 cut(s)	68, 424
BstFNI	CGCG	2 cut(s)	76, 78
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	3 cut(s)	76, 78, 465
BstKTI	GATC	3 cut(s)	108, 226, 448
BstMBI	GATC	3 cut(s)	105, 223, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 75, 340, 469
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	149, 218
BstSFI	CTRYAG	1 cut(s)	264
BstUI	CGCG	2 cut(s)	76, 78
BstV1I	GCAGC	2 cut(s)	278, 533
BstV2I	GAAGAC	2 cut(s)	45, 98
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	68, 424
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	2 cut(s)	580, 739
Cac8I	GCNNGC	3 cut(s)	76, 166, 726
CfoI	GCGC	3 cut(s)	76, 78, 465
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	157, 208, 457, 695, 707
Csp6I	GTAC	3 cut(s)	298, 430, 612
CviAII	CATG	3 cut(s)	591, 654, 751
CviQI	GTAC	3 cut(s)	298, 430, 612
DdeI	CTNAG	2 cut(s)	270, 327
DpnI	GATC	3 cut(s)	107, 225, 447
DpnII	GATC	3 cut(s)	105, 223, 445
DraI	TTTAAA	1 cut(s)	765
DriI	GACNNNNNGTC	2 cut(s)	46, 49
EaeI	YGGCCR	1 cut(s)	166
Eam1105I	GACNNNNNGTC	2 cut(s)	46, 49
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	118
Eco47I	GGWCC	5 cut(s)	157, 208, 457, 695, 707
Eco53kI	GAGCTC	1 cut(s)	116
Eco57I	CTGAAG	2 cut(s)	146, 495
EcoICRI	GAGCTC	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	594, 657, 754
FaqI	GGGAC	3 cut(s)	170, 503, 708
FatI	CATG	3 cut(s)	590, 653, 750
FauI	CCCGC	4 cut(s)	20, 71, 185, 733
Fnu4HI	GCNGC	4 cut(s)	34, 216, 267, 547
FokI	GGATG	2 cut(s)	75, 431
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	34, 216, 267, 547
GlaI	GCGC	3 cut(s)	75, 77, 464
GluI	GCNGC	4 cut(s)	34, 216, 267, 547
GsuI	CTGGAG	1 cut(s)	721
HaeII	RGCGCY	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	3 cut(s)	151, 165, 189
HhaI	GCGC	3 cut(s)	76, 78, 465
Hin1II	CATG	3 cut(s)	594, 657, 754
Hin6I	GCGC	3 cut(s)	74, 76, 463
HinP1I	GCGC	3 cut(s)	74, 76, 463
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	3 cut(s)	17, 44, 322
HpaII	CCGG	3 cut(s)	151, 165, 189
HphI	GGTGA	3 cut(s)	100, 166, 370
Hpy166II	GTNNAC	3 cut(s)	144, 280, 564
Hpy188I	TCNGA	4 cut(s)	16, 40, 248, 619
Hpy188III	TCNNGA	2 cut(s)	57, 227
Hpy8I	GTNNAC	3 cut(s)	144, 280, 564
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	551, 671, 698
HpyCH4III	ACNGT	4 cut(s)	97, 284, 514, 611
HpyCH4IV	ACGT	2 cut(s)	171, 526
HpyCH4V	TGCA	6 cut(s)	266, 410, 497, 517, 626, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 75, 340, 469
HpyF3I	CTNAG	2 cut(s)	270, 327
HpySE526I	ACGT	2 cut(s)	171, 526
Hsp92II	CATG	3 cut(s)	594, 657, 754
HspAI	GCGC	3 cut(s)	74, 76, 463
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	105, 223, 445
LmnI	GCTCC	5 cut(s)	30, 66, 113, 185, 599
Lsp1109I	GCAGC	2 cut(s)	278, 533
LweI	GCATC	3 cut(s)	409, 526, 611
MaeII	ACGT	2 cut(s)	171, 526
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	107, 225, 447
MbiI	CCGCTC	2 cut(s)	33, 180
MboI	GATC	3 cut(s)	105, 223, 445
MboII	GAAGA	4 cut(s)	45, 103, 488, 750
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	6 cut(s)	411, 436, 586, 627, 716, 766
MlyI	GAGTC	3 cut(s)	26, 38, 331
MnlI	CCTC	7 cut(s)	53, 194, 312, 388, 418, 745, 796
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	3 cut(s)	522, 633, 764
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	151, 165, 189
MspR9I	CCNGG	2 cut(s)	151, 220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	2 cut(s)	76, 78
MwoI	GCNNNNNNNGC	4 cut(s)	33, 75, 340, 469
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	105, 223, 445
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	594, 657, 754
NlaIV	GGNNCC	3 cut(s)	158, 225, 696
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	754
PaqCI	CACCTGC	2 cut(s)	580, 739
PauI	GCGCGC	1 cut(s)	74
PciI	ACATGT	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	3 cut(s)	44, 168, 532
PdiI	GCCGGC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	35, 217, 268, 548
PleI	GAGTC	3 cut(s)	25, 38, 330
PpsI	GAGTC	3 cut(s)	25, 38, 330
PscI	ACATGT	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	118
Psp1406I	AACGTT	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	158, 225, 696
PspPI	GGNCC	5 cut(s)	157, 208, 457, 695, 707
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	139
PteI	GCGCGC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	3 cut(s)	299, 431, 613
RsaNI	GTAC	3 cut(s)	298, 430, 612
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	522, 633, 764
SatI	GCNGC	4 cut(s)	34, 216, 267, 547
Sau3AI	GATC	3 cut(s)	105, 223, 445
Sau96I	GGNCC	5 cut(s)	157, 208, 457, 695, 707
SchI	GAGTC	3 cut(s)	26, 38, 331
ScrFI	CCNGG	2 cut(s)	151, 220
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	3 cut(s)	409, 526, 611
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	5 cut(s)	157, 208, 457, 695, 707
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	6 cut(s)	411, 436, 586, 627, 716, 766
SsiI	CCGC	8 cut(s)	27, 33, 78, 111, 178, 216, 422, 726
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	2 cut(s)	149, 218
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	97, 284, 514, 611
TaiI	ACGT	2 cut(s)	174, 529
TasI	AATT	6 cut(s)	411, 436, 586, 627, 716, 766
TatI	WGTACW	3 cut(s)	297, 429, 611
TauI	GCSGC	2 cut(s)	36, 218
Tru1I	TTAA	3 cut(s)	522, 633, 764
Tru9I	TTAA	3 cut(s)	522, 633, 764
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	266, 546
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	7 cut(s)	570, 579, 642, 690, 729, 758, 798
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	1 cut(s)	519
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	5 cut(s)	157, 208, 457, 695, 707
XapI	RAATTY	3 cut(s)	436, 716, 766
XceI	RCATGY	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.