Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

68455521 .. 68460342

Gene Structure 4822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCAGATGTGGGACACTGCAATTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTAAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGCCTGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAACGGTACATACTTTTATGCACACAGTTAGTATTGGCATTGGAGGCAGGCGTCGAATTGTTGGACATATCCAATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

166

Amino Acids

18.54

Weight (kDa)

4.84

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	3 - 149	3.1e-21	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	398
AcuI	CTGAAG	2 cut(s)	153, 276
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	2 cut(s)	280, 428
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	166
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	9
BfaI	CTAG	2 cut(s)	39, 499
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	411, 416
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	317
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	411, 416
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	411, 416
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	269, 426, 447
BstACI	GRCGYC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 464
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 348
Cac8I	GCNNGC	1 cut(s)	469
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	279, 427
CviAII	CATG	1 cut(s)	407
CviJI	RGCY	2 cut(s)	315, 397
CviKI_1	RGCY	2 cut(s)	315, 397
CviQI	GTAC	2 cut(s)	279, 427
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	153, 276
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	410
FaiI	YATR	6 cut(s)	251, 366, 408, 431, 439, 488
FalI	AAGNNNNNCTT	4 cut(s)	151, 183, 320, 352
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	398
FspBI	CTAG	2 cut(s)	39, 499
GluI	GCNGC	1 cut(s)	398
HgaI	GACGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	9, 256
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	4 cut(s)	67, 177, 314, 322
HpyCH4III	ACNGT	3 cut(s)	269, 426, 447
HpyCH4V	TGCA	6 cut(s)	143, 149, 213, 416, 421, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 464
HpyF3I	CTNAG	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	39, 499
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MfeI	CAATTG	2 cut(s)	22, 493
MluCI	AATT	7 cut(s)	22, 45, 186, 214, 346, 476, 493
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	6 cut(s)	10, 87, 172, 235, 299, 457
MroXI	GAANNNNTTC	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	2 cut(s)	22, 493
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	190, 464
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	333
RsaI	GTAC	2 cut(s)	280, 428
RsaNI	GTAC	2 cut(s)	279, 427
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	7 cut(s)	21, 169, 227, 280, 294, 310, 333
Sse9I	AATT	7 cut(s)	22, 45, 186, 214, 346, 476, 493
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	39, 499
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	269, 426, 447
TaqI	TCGA	2 cut(s)	64, 474
TasI	AATT	7 cut(s)	22, 45, 186, 214, 346, 476, 493
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	2 cut(s)	215, 348
TspDTI	ATGAA	2 cut(s)	273, 407
TspRI	CASTG	2 cut(s)	215, 348
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	2 cut(s)	39, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.