Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

80562184 .. 80565535

Gene Structure 3352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTTTTCCAACAGTGATGGATATATACAGCAAGGTGATGTTTGTCCTATCTTTCCTAATAACAACTTTGATGGAAAAAGAGACTTATGAAGGTGGTATATATGGGGAACCTGGTTCTGAAGCTCATGGTGGGTACACCTTTTGTGCTCTGGCAACAATGATTCTGATCAATGAGGTCAATCGTTTGGACTTGCCTAGACTAATTGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGGCACTCTTTCTGGCAGGGAGGTACATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGAACACTGCACTTTGGATACCTCACGCACTTCTACAACATCTCGTATATCTGAAGTGGGCAACAGTTCTGAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGGCAGGAAGTGAATTACAGTGATATTGGATATGATTTAATCAACAGAACTGTAGAAATGAAGGCGCTTTTCCATGCCATTGCATTGCAGCGACATACTTTTATGCACACAGGCAGAGAATGGTGGACTGATAGACAAACCTGGCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

5.09

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	20 - 106	1.8e-21	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	4 cut(s)	141, 285, 408, 426
AfaI	GTAC	3 cut(s)	137, 274, 412
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	112, 584
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	3 cut(s)	13, 67, 239
BciT130I	CCWGG	2 cut(s)	114, 586
BciVI	GTATCC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	198, 595
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	114, 586
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	114, 586
BsaBI	GATNNNNATC	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	328
Bse3DI	GCAATG	2 cut(s)	522, 527
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	114, 586
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	167
BseMI	GCAATG	2 cut(s)	522, 527
BseMII	CTCAG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	522, 527
BssMI	GATC	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	114, 586
Bst4CI	ACNGT	4 cut(s)	16, 401, 464, 496
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	2 cut(s)	114, 586
BstSCI	CCNGG	2 cut(s)	112, 584
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	21, 340, 469
CfoI	GCGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	136, 273, 411
CviAII	CATG	2 cut(s)	128, 518
CviJI	RGCY	1 cut(s)	125
CviKI_1	RGCY	1 cut(s)	125
CviQI	GTAC	3 cut(s)	136, 273, 411
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eco57I	CTGAAG	4 cut(s)	141, 285, 408, 426
EcoRII	CCWGG	2 cut(s)	112, 584
FaeI	CATG	2 cut(s)	131, 521
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	2 cut(s)	127, 517
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	2 cut(s)	198, 595
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	512
HapII	CCGG	1 cut(s)	329
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	2 cut(s)	131, 521
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	138, 570
Hpy188I	TCNGA	4 cut(s)	121, 168, 388, 406
Hpy8I	GTNNAC	2 cut(s)	138, 570
HpyAV	CCTTC	4 cut(s)	86, 309, 401, 499
HpyCH4III	ACNGT	4 cut(s)	16, 401, 464, 496
HpyCH4V	TGCA	5 cut(s)	281, 345, 527, 532, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	131, 521
HspAI	GCGC	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	544
MabI	ACCWGGT	1 cut(s)	112
MaeI	CTAG	2 cut(s)	198, 595
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	204, 318, 457
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	169, 219, 263, 304, 367, 431
MroXI	GAANNNNTTC	1 cut(s)	298
MseI	TTAA	1 cut(s)	482
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	114, 586
MvaI	CCWGG	2 cut(s)	114, 586
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	131, 521
NlaIV	GGNNCC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	112, 584
PspGI	CCWGG	2 cut(s)	112, 584
PspN4I	GGNNCC	1 cut(s)	111
RsaI	GTAC	3 cut(s)	137, 274, 412
RsaNI	GTAC	3 cut(s)	136, 273, 411
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	114, 586
SduI	GDGCHC	1 cut(s)	151
SexAI	ACCWGGT	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	495
Sse9I	AATT	3 cut(s)	204, 318, 457
SspMI	CTAG	2 cut(s)	198, 595
StyD4I	CCNGG	2 cut(s)	112, 584
TaaI	ACNGT	4 cut(s)	16, 401, 464, 496
TasI	AATT	3 cut(s)	204, 318, 457
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TscAI	CASTG	3 cut(s)	21, 347, 469
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	105, 405, 518
TspRI	CASTG	3 cut(s)	21, 347, 469
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	2 cut(s)	198, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.