Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Reverse (-)

26933067 .. 26934147

Gene Structure 1081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGATTTGTTTGTTTTGGAGTGTTGATATTTATTGTCTCGATTCTGTAGGTTCTATGCAAAGGAGTATTTCGATTGTTCTTCTGCCATTGTTCCTGTATCTGTTGTTTTGTATTGGTTTGGTGTTCTATTGTTATTCAGATCTCAATCTAAGCCCCTGTCAGAAACAGATCTCAATCAATCGATTTCACTGTGCTGCTCAATCTAAGCACCTGGCAGAAGCAGAAATTCCAGAAGGAATTCAAGAAGTTTGCAATGAAGTTGAAGCAAAGTTCAGTTCAAAGCGCGGGCAACTATTCCTAGTGGAAACTAGGCCTGAATGGGTGGAGAATGCATGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

114

Amino Acids

13.02

Weight (kDa)

5.02

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	228, 240
AgsI	TTSAA	3 cut(s)	245, 266, 282
AjnI	CCWGG	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	228, 240
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	302, 312
BfmI	CTRYAG	1 cut(s)	48
BglII	AGATCT	2 cut(s)	142, 171
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	184
BsaBI	GATNNNNATC	2 cut(s)	147, 176
Bse3DI	GCAATG	1 cut(s)	262
Bse8I	GATNNNNATC	2 cut(s)	147, 176
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	184
BseJI	GATNNNNATC	2 cut(s)	147, 176
BseMI	GCAATG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	142, 171
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	262
BssMI	GATC	2 cut(s)	142, 171
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	290, 337
BstDEI	CTNAG	2 cut(s)	152, 207
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	145, 174
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	142, 171
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	2 cut(s)	142, 171
BstYI	RGATCY	2 cut(s)	142, 171
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	316
BsuTUI	ATCGAT	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	290, 337
CfoI	GCGC	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	184
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	2 cut(s)	156, 316
CviKI_1	RGCY	2 cut(s)	156, 316
DdeI	CTNAG	2 cut(s)	152, 207
DpnI	GATC	2 cut(s)	144, 173
DpnII	GATC	2 cut(s)	142, 171
Eco147I	AGGCCT	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	213
EcoT22I	ATGCAT	2 cut(s)	337, 341
FaeI	CATG	1 cut(s)	339
FaiI	YATR	2 cut(s)	59, 337
FatI	CATG	1 cut(s)	335
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	302, 312
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	142, 165, 344
Hpy188III	TCNNGA	3 cut(s)	41, 233, 245
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	61, 255, 335, 339
HpyF3I	CTNAG	2 cut(s)	152, 207
Hsp92II	CATG	1 cut(s)	339
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	142, 171
LpnPI	CCDG	6 cut(s)	110, 172, 200, 227, 246, 330
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	302, 312
MalI	GATC	2 cut(s)	144, 173
MboI	GATC	2 cut(s)	142, 171
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	2 cut(s)	142, 171
MluCI	AATT	2 cut(s)	228, 240
Mph1103I	ATGCAT	2 cut(s)	337, 341
MroXI	GAANNNNTTC	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	288
NdeII	GATC	2 cut(s)	142, 171
NlaIII	CATG	1 cut(s)	339
NsiI	ATGCAT	2 cut(s)	337, 341
NspI	RCATGY	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	316
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	142, 171
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	142, 171
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	2 cut(s)	55, 216
SfcI	CTRYAG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	2 cut(s)	228, 240
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	302, 312
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	3 cut(s)	42, 74, 184
TasI	AATT	2 cut(s)	228, 240
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	197
XapI	RAATTY	2 cut(s)	228, 240
XceI	RCATGY	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	2 cut(s)	302, 312
Zsp2I	ATGCAT	2 cut(s)	337, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.