Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016440

Physical Location & Seq

Genomic Coordinates Forward (+)

48401990 .. 48409458

Gene Structure 7469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG374900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGGATAATGACAATGTGCAGAATGCCACTACCTTCAATTGTGGTTCTCAAGACACAACAGATCAATTTCTTTACGAATCTATAAGTGGCCAATCCTCCTGGATAATCTTCATGTTTAAGTACTCAAGGAGGTTTGTAGAAGGTTGCCGGGTTTTTCACCCGCTGAAGTGTTGGATTTTGGTGCTGGCATGGGTTTGGCTTTCTGGGCACTATGAGAAGCCAGAGCCTTATACAAGGTACACCTTTTGTGGGCTGGCAACAATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCACTTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGTACTTCATCTCAGGTTGATGACACCAGAGGTTTTAGGCAGGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGGTTAGTTTACGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

242

Amino Acids

27.79

Weight (kDa)

5.38

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	72 - 238	8.3e-27	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150791 RchiOBHm_Chr2g0158171
rosa_laevigata	RLG00000022064
rosa_roxburghii	Rroxscaffold_5G00336940
rosa_rugosa	Rorug01G0193200 Rorug01G0193300 Rorug05G0267600 Rorug07G0090500 Rorug07G0090600
rosa_samantha	Rh1BG114500 Rh3DG123700 Rh3DG304500 Rh3DG350400 Rh5CG374900 Rh5DG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	164, 662, 688
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	4 cut(s)	188, 417, 540, 558
AfaI	GTAC	4 cut(s)	125, 242, 544, 692
AfiI	CCNNNNNNNGG	2 cut(s)	252, 467
AgsI	TTSAA	2 cut(s)	40, 592
AjnI	CCWGG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	685
Asp700I	GAANNNNTTC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	478
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	2 cut(s)	662, 686
BlsI	GCNGC	2 cut(s)	663, 687
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	103, 152
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	103, 152
BpuEI	CTTGAG	2 cut(s)	36, 112
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 467
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	2 cut(s)	675, 680
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	252, 467
BseMI	GCAATG	2 cut(s)	675, 680
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	697
BsgI	GTGCAG	2 cut(s)	41, 460
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	151, 461
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	2 cut(s)	252, 467
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	64, 273
BspACI	CCGC	3 cut(s)	164, 662, 688
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	597
BsrDI	GCAATG	2 cut(s)	675, 680
BsrI	ACTGG	1 cut(s)	605
BssMI	GATC	2 cut(s)	64, 273
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	189, 258
BstDEI	CTNAG	1 cut(s)	552
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	2 cut(s)	67, 276
BstMBI	GATC	2 cut(s)	64, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 454
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	101, 150
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	697
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	472, 612
Cac8I	GCNNGC	2 cut(s)	189, 258
Csp6I	GTAC	4 cut(s)	124, 241, 543, 691
CviAII	CATG	3 cut(s)	115, 192, 671
CviJI	RGCY	6 cut(s)	93, 202, 223, 229, 256, 661
CviKI_1	RGCY	6 cut(s)	93, 202, 223, 229, 256, 661
CviQI	GTAC	4 cut(s)	124, 241, 543, 691
DdeI	CTNAG	1 cut(s)	552
DpnI	GATC	2 cut(s)	66, 275
DpnII	GATC	2 cut(s)	64, 273
EaeI	YGGCCR	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	188, 417, 540, 558
EcoRII	CCWGG	1 cut(s)	101
FaeI	CATG	3 cut(s)	118, 195, 674
FalI	AAGNNNNNCTT	4 cut(s)	415, 447, 584, 616
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	3 cut(s)	114, 191, 670
FauI	CCCGC	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	662, 686
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	662, 686
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	662, 686
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	151, 461
Hin1II	CATG	3 cut(s)	118, 195, 674
HinfI	GANTC	2 cut(s)	80, 268
HpaII	CCGG	2 cut(s)	151, 461
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	243, 526, 719
Hpy188I	TCNGA	3 cut(s)	273, 520, 538
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	3 cut(s)	243, 526, 719
HpyAV	CCTTC	7 cut(s)	46, 137, 331, 441, 533, 578, 586
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4V	TGCA	7 cut(s)	22, 407, 413, 477, 680, 685, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 454
HpyF3I	CTNAG	1 cut(s)	552
Hsp92II	CATG	3 cut(s)	118, 195, 674
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	64, 273
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	303
MalI	GATC	2 cut(s)	66, 275
MboI	GATC	2 cut(s)	64, 273
MboII	GAAGA	1 cut(s)	103
MfeI	CAATTG	2 cut(s)	40, 286
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	6 cut(s)	40, 68, 286, 309, 450, 610
MluNI	TGGCCA	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	7 cut(s)	109, 126, 274, 351, 436, 499, 563
Mox20I	TGGCCA	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	2 cut(s)	166, 688
MspI	CCGG	2 cut(s)	151, 461
MspR9I	CCNGG	2 cut(s)	103, 152
MunI	CAATTG	2 cut(s)	40, 286
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	208, 454
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	64, 273
NlaIII	CATG	3 cut(s)	118, 195, 674
NlaIV	GGNNCC	1 cut(s)	597
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	80, 268
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	663, 687
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	597
RsaI	GTAC	4 cut(s)	125, 242, 544, 692
RsaNI	GTAC	4 cut(s)	124, 241, 543, 691
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	662, 686
Sau3AI	GATC	2 cut(s)	64, 273
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	103, 152
SduI	GDGCHC	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	51, 127
SmoI	CTYRAG	2 cut(s)	51, 127
Sse9I	AATT	6 cut(s)	40, 68, 286, 309, 450, 610
SsiI	CCGC	3 cut(s)	164, 662, 688
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	101, 150
TaaI	ACNGT	1 cut(s)	533
TaqI	TCGA	1 cut(s)	328
TasI	AATT	6 cut(s)	40, 68, 286, 309, 450, 610
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	2 cut(s)	80, 268
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	479, 612
TseI	GCWGC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	103, 537, 671
TspRI	CASTG	2 cut(s)	479, 612
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.