Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Forward (+)

75584967 .. 75589940

Gene Structure 4974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGCCGGGAAAGACTGGTTTTGATTTCAATGGTGCTTCACAATCATTCAATGTCATAGCTGAATACCTGTTTGGTAAGAATACCACAAAGGAGAAAATGGAGATGACCACACCGGTTTTCATGCATAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

44

Amino Acids

4.96

Weight (kDa)

8.12

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	9 - 41	1.8e-07	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	28, 49
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AsiGI	ACCGGT	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	19
BshTI	ACCGGT	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	5, 113
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	4
Cfr10I	RCCGGY	1 cut(s)	112
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	1 cut(s)	59
CviKI_1	RGCY	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	126
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	56, 122, 126
FatI	CATG	1 cut(s)	120
HapII	CCGG	2 cut(s)	5, 113
Hin1II	CATG	1 cut(s)	124
HpaII	CCGG	2 cut(s)	5, 113
HpyCH4V	TGCA	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	18, 80, 126
Mph1103I	ATGCAT	1 cut(s)	126
MseI	TTAA	1 cut(s)	133
MspI	CCGG	2 cut(s)	5, 113
MspR9I	CCNGG	1 cut(s)	6
NciI	CCSGG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	2 cut(s)	61, 69
SgeI	CNNG	5 cut(s)	17, 18, 27, 79, 125
StyD4I	CCNGG	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	133
Tru9I	TTAA	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.