Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001524

Physical Location & Seq

Genomic Coordinates Reverse (-)

78879026 .. 78880192

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAAATGACGGCTGCCCAATTTGGAGGTGGTGCACCTTCTACCGGGTTGAGGAATAGAACCAGTGACTTCAATTCAGTAACTAAGAAAGATTGGGTTTATTCATTGCGGCAAACGGAAGCTAAGTTTGTGGCACTAAGCAATAGAAAGGATTTGAGCAATGTCAGTGCTGTGGGGGGCAGCAATCTGTCATCTAAGCATAGATCACAGTACTCGCGGCTAGTTGCTCATCGCAGAAGGACCCGTTTTCCGGTGGTGGCTAATCAATTGAGTTCGGAGTTTGGTGTCGGTTGCTCTGAGGTTGAGGAAAAGGTGATTCTTAAGGAAATGCATGCTCCCCTAACTGCTGATCGTGATGAACCTGAGTTGAGTGACATTCCTGTCCCTGAAGCATATTCTCCAAATGTGAAACGCGAGCTGCTGATGCTTTCCTTACCTGCAATTGTGGGTCAGGCAATTGATCCCATAGCAATGCTGATGGAGACTGCCTATATTGGTAGACTGGGTATGCTTCACTCCTTGAAACAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE Polysacc_synt_C

Protein Analysis

177

Amino Acids

19.5

Weight (kDa)

9.47

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38380 AT4G38380 AT4G38380 AT4G38380 AT4G38380
fragaria_vesca	FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390
malus_domestica	MD00G1083700.v1.1 MD00G1176900.v1.1 MD10G1138300.v1.1
prunus_persica	Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1
pyrus_communis	pycom05g13000 pycom05g13020 pycom10g11760
rosa_chinensis	RchiOBHm_Chr2g0163361 RchiOBHm_Chr6g0280181
rosa_laevigata	RLG00000013079
rosa_multiflora	Rmu_sc0001554.1_g000011 Rmu_sc0002826.1_g000031 Rmu_sc0007137.1_g000015 Rmu_sc0007137.1_g000016 Rmu_sc0008629.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188330
rosa_rugosa	Rorug06G0130500 Rorug06G0130600 Rorug06G0130700
rosa_samantha	Rh6AG240800 Rh6BG244500 Rh6CG246100 Rh6DG237200
rosa_wichuraiana	Rw1G013260 Rw6G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	2 cut(s)	217, 414
AciI	CCGC	2 cut(s)	109, 217
AclWI	GGATC	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	44, 51, 250
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	73, 523
AluBI	AGCT	2 cut(s)	122, 418
AluI	AGCT	2 cut(s)	122, 418
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	476
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	455
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	14, 180, 418
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	192, 405
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	5 cut(s)	15, 110, 181, 218, 419
BlsI	GCNGC	5 cut(s)	16, 111, 182, 219, 420
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 51, 250
Bse1I	ACTGG	2 cut(s)	63, 507
Bse3DI	GCAATG	3 cut(s)	104, 166, 477
BseLI	CCNNNNNNNGG	3 cut(s)	44, 51, 250
BseMI	GCAATG	3 cut(s)	104, 166, 477
BseMII	CTCAG	2 cut(s)	288, 354
BseNI	ACTGG	2 cut(s)	63, 507
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	192, 405
Bsh1236I	CGCG	2 cut(s)	217, 414
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	45, 251
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	44, 51, 250
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	203, 349, 460
BspACI	CCGC	2 cut(s)	109, 217
BspCNI	CTCAG	2 cut(s)	289, 355
BspFNI	CGCG	2 cut(s)	217, 414
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	3 cut(s)	104, 166, 477
BsrI	ACTGG	2 cut(s)	63, 507
BssMI	GATC	3 cut(s)	203, 349, 460
Bst4CI	ACNGT	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	333, 416
BstDEI	CTNAG	6 cut(s)	84, 123, 137, 195, 297, 363
BstFNI	CGCG	2 cut(s)	217, 414
BstKTI	GATC	3 cut(s)	206, 352, 463
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	203, 349, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	2 cut(s)	217, 414
BstV1I	GCAGC	2 cut(s)	192, 405
BtgZI	GCGATG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	70, 172
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	333, 416
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	5 cut(s)	14, 122, 220, 260, 418
CviKI_1	RGCY	5 cut(s)	14, 122, 220, 260, 418
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	6 cut(s)	84, 123, 137, 195, 297, 363
DpnI	GATC	3 cut(s)	205, 351, 462
DpnII	GATC	3 cut(s)	203, 349, 460
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	1 cut(s)	335
FaiI	YATR	6 cut(s)	201, 333, 394, 467, 492, 509
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	5 cut(s)	15, 110, 181, 218, 419
Fsp4HI	GCNGC	5 cut(s)	15, 110, 181, 218, 419
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	5 cut(s)	15, 110, 181, 218, 419
HapII	CCGG	2 cut(s)	45, 251
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	45, 251
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	35, 500
Hpy188I	TCNGA	2 cut(s)	277, 298
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	35, 500
HpyAV	CCTTC	2 cut(s)	48, 231
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	35, 331, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	6 cut(s)	84, 123, 137, 195, 297, 363
Hsp92II	CATG	1 cut(s)	335
Kzo9I	GATC	3 cut(s)	203, 349, 460
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	58, 76, 264, 375, 393, 399, 437, 450, 488
Lsp1109I	GCAGC	2 cut(s)	192, 405
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	3 cut(s)	65, 79, 371
MalI	GATC	3 cut(s)	205, 351, 462
MboI	GATC	3 cut(s)	203, 349, 460
MfeI	CAATTG	3 cut(s)	266, 441, 456
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	5 cut(s)	20, 73, 266, 441, 456
MnlI	CCTC	4 cut(s)	20, 45, 292, 298
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	2 cut(s)	45, 251
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	3 cut(s)	266, 441, 456
MvnI	CGCG	2 cut(s)	217, 414
MwoI	GCNNNNNNNGC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	3 cut(s)	203, 349, 460
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	65, 371
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	5 cut(s)	16, 111, 182, 219, 420
PpuMI	RGGWCCY	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	240
PspPPI	RGGWCCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	5 cut(s)	15, 110, 181, 218, 419
Sau3AI	GATC	3 cut(s)	203, 349, 460
Sau96I	GGNCC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	8 cut(s)	31, 40, 124, 303, 315, 364, 420, 439
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	5 cut(s)	20, 73, 266, 441, 456
SsiI	CCGC	2 cut(s)	109, 217
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	210
TasI	AATT	5 cut(s)	20, 73, 266, 441, 456
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	2 cut(s)	112, 220
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	70, 172
TseFI	GTSAC	2 cut(s)	65, 371
TseI	GCWGC	3 cut(s)	14, 180, 418
Tsp45I	GTSAC	2 cut(s)	65, 371
TspDTI	ATGAA	3 cut(s)	17, 93, 372
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	70, 172
Vha464I	CTTAAG	1 cut(s)	320
VneI	GTGCAC	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	240
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.