Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001554.1

Orthogroup ID

OG0001524

Physical Location & Seq

Genomic Coordinates Forward (+)

51306 .. 51665

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001554.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgacagctgcccaatttggaggtggtgcaccttctaccgggttgaggaatagaaccagtgacttcaattcagtaactaagaaagattgggtttattcattgcagcaaacggaagctaagtttctggcactaagcaatagaaaggatttgagcaatgtcagtgctgtggggggcagcaatctgtcatctaagcatagatcacagtactcgcggctagttgctcatctcagaaggacccgttttccggtggtggctaatcaattgagttcggagtttggtgtctgttgctctgaggttgaggaaaaggtgattcttaaggaaatgcatgctcccctaactgctgatcgtgatgaaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE Polysacc_synt_C

Protein Analysis

119

Amino Acids

13.12

Weight (kDa)

9.34

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38380 AT4G38380 AT4G38380 AT4G38380 AT4G38380
fragaria_vesca	FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390
malus_domestica	MD00G1083700.v1.1 MD00G1176900.v1.1 MD10G1138300.v1.1
prunus_persica	Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1
pyrus_communis	pycom05g13000 pycom05g13020 pycom10g11760
rosa_chinensis	RchiOBHm_Chr2g0163361 RchiOBHm_Chr6g0280181
rosa_laevigata	RLG00000013079
rosa_multiflora	Rmu_sc0001554.1_g000011 Rmu_sc0002826.1_g000031 Rmu_sc0007137.1_g000015 Rmu_sc0007137.1_g000016 Rmu_sc0008629.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188330
rosa_rugosa	Rorug06G0130500 Rorug06G0130600 Rorug06G0130700
rosa_samantha	Rh6AG240800 Rh6BG244500 Rh6CG246100 Rh6DG237200
rosa_wichuraiana	Rw1G013260 Rw6G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AciI	CCGC	1 cut(s)	211
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	38, 45, 244
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	2 cut(s)	8, 116
AluI	AGCT	2 cut(s)	8, 116
Alw21I	GWGCWC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	27
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	8, 103, 174
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	115, 186
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	4 cut(s)	9, 104, 175, 212
BlsI	GCNGC	4 cut(s)	10, 105, 176, 213
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 45, 244
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	98, 160
BseLI	CCNNNNNNNGG	3 cut(s)	38, 45, 244
BseMI	GCAATG	2 cut(s)	98, 160
BseMII	CTCAG	2 cut(s)	241, 282
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	115, 186
Bsh1236I	CGCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	39, 245
BslI	CCNNNNNNNGG	3 cut(s)	38, 45, 244
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	197, 343
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	240, 283
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	98, 160
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	197, 343
Bst4CI	ACNGT	2 cut(s)	204, 357
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	6 cut(s)	78, 117, 131, 189, 227, 291
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	200, 346
BstMBI	GATC	2 cut(s)	197, 343
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	115, 186
BtsIMutI	CAGTG	2 cut(s)	64, 166
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	4 cut(s)	8, 116, 214, 254
CviKI_1	RGCY	4 cut(s)	8, 116, 214, 254
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	6 cut(s)	78, 117, 131, 189, 227, 291
DpnI	GATC	2 cut(s)	199, 345
DpnII	GATC	2 cut(s)	197, 343
Eco47I	GGWCC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	1 cut(s)	329
FaiI	YATR	2 cut(s)	195, 327
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	9, 104, 175, 212
Fsp4HI	GCNGC	4 cut(s)	9, 104, 175, 212
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	4 cut(s)	9, 104, 175, 212
HapII	CCGG	2 cut(s)	39, 245
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	2 cut(s)	39, 245
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	230, 271, 292
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	42, 225
HpyCH4III	ACNGT	2 cut(s)	204, 357
HpyCH4V	TGCA	3 cut(s)	29, 103, 325
HpyF3I	CTNAG	6 cut(s)	78, 117, 131, 189, 227, 291
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	197, 343
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	4 cut(s)	52, 70, 110, 258
Lsp1109I	GCAGC	2 cut(s)	115, 186
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	59, 73
MalI	GATC	2 cut(s)	199, 345
MboI	GATC	2 cut(s)	197, 343
MfeI	CAATTG	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	14, 67, 260
MnlI	CCTC	4 cut(s)	14, 39, 286, 292
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	39, 245
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	211
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	197, 343
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	10, 105, 176, 213
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	234
PspPPI	RGGWCCY	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	9, 104, 175, 212
Sau3AI	GATC	2 cut(s)	197, 343
Sau96I	GGNCC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	10, 25, 34, 118, 297, 309
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	14, 67, 260
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	204, 357
TasI	AATT	3 cut(s)	14, 67, 260
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	64, 166
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	8, 103, 174
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	64, 166
Vha464I	CTTAAG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	234
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.