Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008629.1

Orthogroup ID

OG0001524

Physical Location & Seq

Genomic Coordinates Reverse (-)

38797 .. 39156

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008629.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgacggctacccaatttggaggtggtgcaccttctaccgggttgaggaatagaaccagtgacttcaattcagtaactaagaaagattgggtttattcattgcggcaaacggaagctaagtttgtggcactaagcaatagaaaggatttgagcaatgtcagtgctgtggggggcagcaatctgtcatctaagcatagatcacagtactcgcggctagttgctcatcgcagaaggacccgttttctggtggtggctaatcaattgagttcggattttggtgtcggttgctctgaggttgaggaaaaggtgattcttaaggaaatgcatgctcccctaactgctgatcgtgatgaaccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE Polysacc_synt_C

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

9.91

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38380 AT4G38380 AT4G38380 AT4G38380 AT4G38380
fragaria_vesca	FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390 FvH4_2g16390
malus_domestica	MD00G1083700.v1.1 MD00G1176900.v1.1 MD10G1138300.v1.1
prunus_persica	Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1 Prupe.8G176900_v2.0.a1
pyrus_communis	pycom05g13000 pycom05g13020 pycom10g11760
rosa_chinensis	RchiOBHm_Chr2g0163361 RchiOBHm_Chr6g0280181
rosa_laevigata	RLG00000013079
rosa_multiflora	Rmu_sc0001554.1_g000011 Rmu_sc0002826.1_g000031 Rmu_sc0007137.1_g000015 Rmu_sc0007137.1_g000016 Rmu_sc0008629.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188330
rosa_rugosa	Rorug06G0130500 Rorug06G0130600 Rorug06G0130700
rosa_samantha	Rh6AG240800 Rh6BG244500 Rh6CG246100 Rh6DG237200
rosa_wichuraiana	Rw1G013260 Rw6G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	103, 211
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	38, 45, 244
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	27
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	104, 175, 212
BlsI	GCNGC	3 cut(s)	105, 176, 213
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 45, 244
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	98, 160
BseLI	CCNNNNNNNGG	3 cut(s)	38, 45, 244
BseMI	GCAATG	2 cut(s)	98, 160
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	38, 45, 244
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	197, 343
BspACI	CCGC	2 cut(s)	103, 211
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	98, 160
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	197, 343
Bst4CI	ACNGT	2 cut(s)	204, 357
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	5 cut(s)	78, 117, 131, 189, 291
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	200, 346
BstMBI	GATC	2 cut(s)	197, 343
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	64, 166
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	4 cut(s)	8, 116, 214, 254
CviKI_1	RGCY	4 cut(s)	8, 116, 214, 254
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	5 cut(s)	78, 117, 131, 189, 291
DpnI	GATC	2 cut(s)	199, 345
DpnII	GATC	2 cut(s)	197, 343
Eco47I	GGWCC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	1 cut(s)	329
FaiI	YATR	2 cut(s)	195, 327
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	104, 175, 212
Fsp4HI	GCNGC	3 cut(s)	104, 175, 212
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	3 cut(s)	104, 175, 212
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	271, 292
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	42, 225
HpyCH4III	ACNGT	2 cut(s)	204, 357
HpyCH4V	TGCA	2 cut(s)	29, 325
HpyF3I	CTNAG	5 cut(s)	78, 117, 131, 189, 291
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	197, 343
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	3 cut(s)	52, 70, 230
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	59, 73
MalI	GATC	2 cut(s)	199, 345
MboI	GATC	2 cut(s)	197, 343
MfeI	CAATTG	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	14, 67, 260
MnlI	CCTC	4 cut(s)	14, 39, 286, 292
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	211
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	197, 343
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	105, 176, 213
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	234
PspPPI	RGGWCCY	1 cut(s)	234
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	104, 175, 212
Sau3AI	GATC	2 cut(s)	197, 343
Sau96I	GGNCC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	5 cut(s)	25, 34, 118, 297, 309
SgeI	CNNG	9 cut(s)	51, 52, 69, 220, 222, 227, 249, 257, 338
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	14, 67, 260
SsiI	CCGC	2 cut(s)	103, 211
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	204, 357
TasI	AATT	3 cut(s)	14, 67, 260
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	106, 214
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	64, 166
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	64, 166
Vha464I	CTTAAG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	234
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.