RchiOBHm_Chr2g0163361

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001524
Physical Location & Seq
Reverse (-)
78879026 .. 78880192
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53155

Sequence Viewer

Length: 534 bp
ATGAAAATGACGGCTGCCCAATTTGGAGGTGGTGCACCTTCTACCGGGTTGAGGAATAGAACCAGTGACTTCAATTCAGTAACTAAGAAAGATTGGGTTTATTCATTGCGGCAAACGGAAGCTAAGTTTGTGGCACTAAGCAATAGAAAGGATTTGAGCAATGTCAGTGCTGTGGGGGGCAGCAATCTGTCATCTAAGCATAGATCACAGTACTCGCGGCTAGTTGCTCATCGCAGAAGGACCCGTTTTCCGGTGGTGGCTAATCAATTGAGTTCGGAGTTTGGTGTCGGTTGCTCTGAGGTTGAGGAAAAGGTGATTCTTAAGGAAATGCATGCTCCCCTAACTGCTGATCGTGATGAACCTGAGTTGAGTGACATTCCTGTCCCTGAAGCATATTCTCCAAATGTGAAACGCGAGCTGCTGATGCTTTCCTTACCTGCAATTGTGGGTCAGGCAATTGATCCCATAGCAATGCTGATGGAGACTGCCTATATTGGTAGACTGGGTATGCTTCACTCCTTGAAACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE Polysacc_synt_C

Protein Analysis

177

Amino Acids

19.5

Weight (kDa)

9.47

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 499
AccII CGCG 2 cut(s) 217, 414
AciI CCGC 2 cut(s) 109, 217
AclWI GGATC 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 3 cut(s) 44, 51, 250
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 73, 523
AluBI AGCT 2 cut(s) 122, 418
AluI AGCT 2 cut(s) 122, 418
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 476
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 1 cut(s) 455
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 14, 180, 418
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 192, 405
BccI CCATC 1 cut(s) 472
BceAI ACGGC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 221
BfrI CTTAAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 5 cut(s) 15, 110, 181, 218, 419
BlsI GCNGC 5 cut(s) 16, 111, 182, 219, 420
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 414
BmuI ACTGGG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 51, 250
Bse1I ACTGG 2 cut(s) 63, 507
Bse3DI GCAATG 3 cut(s) 104, 166, 477
BseLI CCNNNNNNNGG 3 cut(s) 44, 51, 250
BseMI GCAATG 3 cut(s) 104, 166, 477
BseMII CTCAG 2 cut(s) 288, 354
BseNI ACTGG 2 cut(s) 63, 507
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 192, 405
Bsh1236I CGCG 2 cut(s) 217, 414
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 45, 251
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 3 cut(s) 44, 51, 250
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 203, 349, 460
BspACI CCGC 2 cut(s) 109, 217
BspCNI CTCAG 2 cut(s) 289, 355
BspFNI CGCG 2 cut(s) 217, 414
BspLI GGNNCC 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 445
BspPI GGATC 1 cut(s) 455
BspTI CTTAAG 1 cut(s) 320
BsrDI GCAATG 3 cut(s) 104, 166, 477
BsrI ACTGG 2 cut(s) 63, 507
BssMI GATC 3 cut(s) 203, 349, 460
Bst4CI ACNGT 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 333, 416
BstDEI CTNAG 6 cut(s) 84, 123, 137, 195, 297, 363
BstFNI CGCG 2 cut(s) 217, 414
BstKTI GATC 3 cut(s) 206, 352, 463
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 203, 349, 460
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 2 cut(s) 217, 414
BstV1I GCAGC 2 cut(s) 192, 405
BtgZI GCGATG 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 70, 172
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 333, 416
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 332
CviJI RGCY 5 cut(s) 14, 122, 220, 260, 418
CviKI_1 RGCY 5 cut(s) 14, 122, 220, 260, 418
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 6 cut(s) 84, 123, 137, 195, 297, 363
DpnI GATC 3 cut(s) 205, 351, 462
DpnII GATC 3 cut(s) 203, 349, 460
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 333
FaeI CATG 1 cut(s) 335
FaiI YATR 6 cut(s) 201, 333, 394, 467, 492, 509
FaqI GGGAC 1 cut(s) 368
FatI CATG 1 cut(s) 331
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 5 cut(s) 15, 110, 181, 218, 419
Fsp4HI GCNGC 5 cut(s) 15, 110, 181, 218, 419
FspBI CTAG 1 cut(s) 221
GluI GCNGC 5 cut(s) 15, 110, 181, 218, 419
HapII CCGG 2 cut(s) 45, 251
Hin1II CATG 1 cut(s) 335
HinfI GANTC 1 cut(s) 316
HpaII CCGG 2 cut(s) 45, 251
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 35, 500
Hpy188I TCNGA 2 cut(s) 277, 298
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 2 cut(s) 35, 500
HpyAV CCTTC 2 cut(s) 48, 231
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 35, 331, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 6 cut(s) 84, 123, 137, 195, 297, 363
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 3 cut(s) 203, 349, 460
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 9 cut(s) 58, 76, 264, 375, 393, 399, 437, 450, 488
Lsp1109I GCAGC 2 cut(s) 192, 405
LweI GCATC 1 cut(s) 414
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 65, 79, 371
MalI GATC 3 cut(s) 205, 351, 462
MboI GATC 3 cut(s) 203, 349, 460
MfeI CAATTG 3 cut(s) 266, 441, 456
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 5 cut(s) 20, 73, 266, 441, 456
MnlI CCTC 4 cut(s) 20, 45, 292, 298
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 2 cut(s) 45, 251
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 3 cut(s) 266, 441, 456
MvnI CGCG 2 cut(s) 217, 414
MwoI GCNNNNNNNGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 46
NdeII GATC 3 cut(s) 203, 349, 460
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 242
NmuCI GTSAC 2 cut(s) 65, 371
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 1 cut(s) 335
PaeI GCATGC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 5 cut(s) 16, 111, 182, 219, 420
PpuMI RGGWCCY 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 1 cut(s) 240
PspPPI RGGWCCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 5 cut(s) 15, 110, 181, 218, 419
Sau3AI GATC 3 cut(s) 203, 349, 460
Sau96I GGNCC 1 cut(s) 240
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 37
SetI ASST 8 cut(s) 31, 40, 124, 303, 315, 364, 420, 439
SfaNI GCATC 1 cut(s) 414
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 335
Sse9I AATT 5 cut(s) 20, 73, 266, 441, 456
SsiI CCGC 2 cut(s) 109, 217
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 210
TasI AATT 5 cut(s) 20, 73, 266, 441, 456
TatI WGTACW 1 cut(s) 210
TauI GCSGC 2 cut(s) 112, 220
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 70, 172
TseFI GTSAC 2 cut(s) 65, 371
TseI GCWGC 3 cut(s) 14, 180, 418
Tsp45I GTSAC 2 cut(s) 65, 371
TspDTI ATGAA 3 cut(s) 17, 93, 372
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 70, 172
Vha464I CTTAAG 1 cut(s) 320
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 499
XspI CTAG 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.