Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

83859254 .. 83861167

Gene Structure 1914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGACTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGGATTGAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGACCTCAAGCATGACACCTTCACTCCTGAAGAGGAAGAGCATATTATCAACCTTCATAAGGCTATAGGAAGCAGGTGGTCTCTGATTGCAAAGCAACTACCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATCGACCCTGTAACCCACAAACCCATCTCCCAGATCCTCTCTGACTATGGAAACATCACTAGCCTTCCAAAGCACATCGGTAACCATTTTGGGCCATCCTTCAACAAGTTGAACATGAGCACCACATTTGTACCTGTATCAGATCCATCTTCGGGGATCACAGGACTTGCATACACCAATATGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCCTCTACTAGCACTCTTCCCTTCGGCTTTCTGTCTCAGTTTCAAGCAATGAATCAAGACGACAATGTTTCATTGCCTCCACACTTTTCGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCACAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGAAGTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCAGGCATTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCAAATAGCTTCTTCTTCTTCATCTTCCTTGAGTTCATTTGTGGACACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

366

Amino Acids

39.85

Weight (kDa)

6.36

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.7e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 110	8.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 119	6e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccII	CGCG	1 cut(s)	743
AciI	CCGC	2 cut(s)	731, 819
AclWI	GGATC	4 cut(s)	388, 497, 524, 928
AcsI	RAATTY	2 cut(s)	894, 967
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	4 cut(s)	247, 512, 562, 884
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	139, 463, 472, 623, 851, 914, 955
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	156, 334, 346, 951, 989
AluI	AGCT	5 cut(s)	156, 334, 346, 951, 989
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	3 cut(s)	273, 618, 906
AlwI	GGATC	4 cut(s)	388, 497, 524, 928
AoxI	GGCC	3 cut(s)	8, 185, 452
ApeKI	GCWGC	3 cut(s)	56, 156, 1058
ApoI	RAATTY	2 cut(s)	894, 967
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	846
AspS9I	GGNCC	2 cut(s)	452, 944
AsuHPI	GGTGA	1 cut(s)	858
AsuII	TTCGAA	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	944
AxyI	CCTNAGG	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BanII	GRGCYC	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	68, 143, 1070
BccI	CCATC	4 cut(s)	392, 463, 514, 1076
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	3 cut(s)	273, 618, 906
BfaI	CTAG	2 cut(s)	420, 588
BfmI	CTRYAG	3 cut(s)	54, 157, 252
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	3 cut(s)	57, 157, 1059
BlsI	GCNGC	3 cut(s)	58, 158, 1060
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	452, 944
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	55, 872
BpiI	GAAGAC	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	2 cut(s)	179, 1030
BsaBI	GATNNNNATC	2 cut(s)	359, 925
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 512, 562, 884
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	3 cut(s)	633, 650, 740
Bse8I	GATNNNNATC	2 cut(s)	359, 925
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	5 cut(s)	70, 455, 815, 1087, 1091
BseJI	GATNNNNATC	2 cut(s)	359, 925
BseLI	CCNNNNNNNGG	4 cut(s)	247, 512, 562, 884
BseMI	GCAATG	3 cut(s)	633, 650, 740
BseMII	CTCAG	3 cut(s)	196, 629, 917
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	3 cut(s)	68, 143, 1070
BsgI	GTGCAG	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	3 cut(s)	10, 187, 454
BsiHKAI	GWGCWC	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	247, 512, 562, 884
BsmAI	GTCTC	3 cut(s)	273, 618, 906
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	10, 187, 454
Bso31I	GGTCTC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	482, 731
Bsp143I	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
BspACI	CCGC	2 cut(s)	731, 819
BspANI	GGCC	3 cut(s)	10, 187, 454
BspCNI	CTCAG	3 cut(s)	195, 628, 916
BspFNI	CGCG	1 cut(s)	743
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	2 cut(s)	58, 161
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	388, 497, 524, 928
BspQI	GCTCTTC	2 cut(s)	146, 219
BspT104I	TTCGAA	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	3 cut(s)	633, 650, 740
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	115, 765, 883
Bst6I	CTCTTC	5 cut(s)	32, 146, 213, 219, 600
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	82, 161, 731, 861
BstDEI	CTNAG	6 cut(s)	123, 164, 182, 615, 903, 1033
BstEII	GGTNACC	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	5 cut(s)	70, 455, 815, 1087, 1091
BstFNI	CGCG	1 cut(s)	743
BstKTI	GATC	7 cut(s)	396, 505, 519, 721, 826, 923, 982
BstMAI	GTCTC	3 cut(s)	273, 618, 906
BstMBI	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 869
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	3 cut(s)	54, 157, 252
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	68, 143, 1070
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	3 cut(s)	393, 502, 920
BstYI	RGATCY	3 cut(s)	393, 502, 920
Bsu36I	CCTNAGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	10, 187, 454
BtsCI	GGATG	5 cut(s)	70, 455, 815, 1087, 1091
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	82, 161, 731, 861
Cfr13I	GGNCC	2 cut(s)	452, 944
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	4 cut(s)	95, 200, 475, 803
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	6 cut(s)	123, 164, 182, 615, 903, 1033
DpnI	GATC	7 cut(s)	395, 504, 518, 720, 825, 922, 981
DpnII	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
Eam1104I	CTCTTC	5 cut(s)	32, 146, 213, 219, 600
EarI	CTCTTC	5 cut(s)	32, 146, 213, 219, 600
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	944
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	894
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	731
FaeI	CATG	4 cut(s)	98, 203, 478, 806
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	94, 199, 474, 802
FauI	CCCGC	1 cut(s)	738
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	3 cut(s)	57, 157, 1059
FokI	GGATG	4 cut(s)	77, 442, 802, 1094
FriOI	GRGCYC	1 cut(s)	731
Fsp4HI	GCNGC	3 cut(s)	57, 157, 1059
FspBI	CTAG	2 cut(s)	420, 588
GluI	GCNGC	3 cut(s)	57, 157, 1059
HaeIII	GGCC	3 cut(s)	10, 187, 454
HgaI	GACGC	1 cut(s)	732
Hin1II	CATG	4 cut(s)	98, 203, 478, 806
HindIII	AAGCTT	2 cut(s)	344, 949
HinfI	GANTC	5 cut(s)	45, 99, 360, 566, 631
HphI	GGTGA	1 cut(s)	858
Hpy166II	GTNNAC	2 cut(s)	171, 1024
Hpy188I	TCNGA	5 cut(s)	104, 273, 403, 502, 879
Hpy188III	TCNNGA	4 cut(s)	49, 215, 635, 1040
Hpy8I	GTNNAC	2 cut(s)	171, 1024
HpyAV	CCTTC	6 cut(s)	217, 251, 434, 469, 610, 806
HpyCH4III	ACNGT	3 cut(s)	115, 765, 883
HpyCH4V	TGCA	5 cut(s)	56, 159, 278, 530, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 869
HpyF3I	CTNAG	6 cut(s)	123, 164, 182, 615, 903, 1033
Hsp92II	CATG	4 cut(s)	98, 203, 478, 806
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
LguI	GCTCTTC	2 cut(s)	146, 219
Lsp1109I	GCAGC	3 cut(s)	68, 143, 1070
LweI	GCATC	2 cut(s)	55, 872
MaeI	CTAG	2 cut(s)	420, 588
MaeIII	GTNAC	6 cut(s)	370, 440, 567, 676, 737, 757
MalI	GATC	7 cut(s)	395, 504, 518, 720, 825, 922, 981
MboI	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
MflI	RGATCY	3 cut(s)	393, 502, 920
MhlI	GDGCHC	2 cut(s)	482, 731
MluCI	AATT	5 cut(s)	106, 175, 781, 894, 967
MluI	ACGCGT	1 cut(s)	741
MlyI	GAGTC	3 cut(s)	39, 108, 575
MmeI	TCCRAC	3 cut(s)	82, 898, 902
MroXI	GAANNNNTTC	1 cut(s)	846
MseI	TTAA	2 cut(s)	780, 936
MslI	CAYNNNNRTG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	2 cut(s)	65, 869
NdeII	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
NlaIII	CATG	4 cut(s)	98, 203, 478, 806
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	567, 737, 757
NspV	TTCGAA	1 cut(s)	668
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	2 cut(s)	146, 219
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	2 cut(s)	360, 631
PkrI	GCNGC	3 cut(s)	58, 158, 1060
PleI	GAGTC	3 cut(s)	39, 107, 574
PpsI	GAGTC	3 cut(s)	39, 107, 574
PshBI	ATTAAT	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	452, 944
PstI	CTGCAG	2 cut(s)	58, 161
PsuI	RGATCY	3 cut(s)	393, 502, 920
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	539
SapI	GCTCTTC	2 cut(s)	146, 219
SaqAI	TTAA	2 cut(s)	780, 936
SatI	GCNGC	3 cut(s)	57, 157, 1059
Sau3AI	GATC	7 cut(s)	393, 502, 516, 718, 823, 920, 979
Sau96I	GGNCC	2 cut(s)	452, 944
SchI	GAGTC	3 cut(s)	39, 108, 575
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	482, 731
SfaNI	GCATC	2 cut(s)	55, 872
SfcI	CTRYAG	3 cut(s)	54, 157, 252
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	194, 1009
SmoI	CTYRAG	2 cut(s)	194, 1009
Sse9I	AATT	5 cut(s)	106, 175, 781, 894, 967
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	731, 819
SspMI	CTAG	2 cut(s)	420, 588
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	115, 765, 883
TaqI	TCGA	2 cut(s)	363, 668
TasI	AATT	5 cut(s)	106, 175, 781, 894, 967
TfiI	GAWTC	2 cut(s)	360, 631
Tru1I	TTAA	2 cut(s)	780, 936
Tru9I	TTAA	2 cut(s)	780, 936
TseFI	GTSAC	3 cut(s)	567, 737, 757
TseI	GCWGC	3 cut(s)	56, 156, 1058
Tsp45I	GTSAC	3 cut(s)	567, 737, 757
TspDTI	ATGAA	9 cut(s)	233, 566, 639, 644, 687, 804, 915, 990, 1005
VpaK11BI	GGWCC	1 cut(s)	944
VspI	ATTAAT	1 cut(s)	936
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	2 cut(s)	894, 967
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	2 cut(s)	420, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.