RchiOBHm_Chr2g0175511

Peptidase family M48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006709
Physical Location & Seq
Reverse (-)
87693916 .. 87696895
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGGCTTCCGTTCCCCTATCTTCTCTCTCCCTCAACCACAACCCTACCTCTCTCAGCTTCATCTCCACAGCTTCAGATCACTTCAGGCTTGCTTCACCTACCTTTCAATTCGCCACCGTCAGCAAATTTCGCTGCGTCAGGTTCGCCGTGAGTTGCAGAGCTTCCTCCGTCGTCTTCCACAACCTCGACGCCGATGACTTCCGCCACCCTCTCGATAAACAGAATACGTTGATTTTGAGAGCGATTCCAGGACTAACTGAAGTTGGAAAGGTTCTACTAGGATCTGTTACGGAGCAAGTGATGCTTCTTGAGAATATCGGAACGTCCCTTCTTGTTTCGGAAAATCAGCTTTCTGATCTACATAAATTGATGGTTGAAGCCGCGGACATACTCAACATTGATGCTCCTGATTTATATGTTCGTCAAAGTCCTGTACCAAATGCATACACTTTAGCAATAAGTGGTAAAAAGCCATTTGTTGTTATCCATACTAGTCTAGTGGAGCTTTTGACACGAGAAGAGTTGCAGGCTGTTTTGGCTCATGAGTTGGGTCATTTGAAATGCGACCATGGTGTGTGGCTTACATTTGCAAATATCCTTACCCTTGGAGCTTATACCATACCTGGGCTTGGTGGCATGATTGCTCAGAGTTTAGAAGAGCAGTTATTTCGTTGGCTTCGAGCAGCAGAGCTAACCTGTGATCGTGCAGCCCTTCTTGTTGCTCAAGACCCAAAGGTGGTCGTCTCTGTGTTGATGAAACTAGCTGGTGGATGCCCATCTATGGCTGATCAACTAAATGTGGATGCATTTTTGGAACAAGCTCGCTCTTATGACAAAGCTTCTTCAAGCCCTGTAGGCTGGTATATAAGAAATGCACAAACGAGGCAACTTTCACATCCTTTGCCAGTACTACGAGCTCGTGAAATTGATACATGGTCAAGAAGTCAAGAGTACAGAACTCTTCTAAAACGAGCAACACAGATCACTGCTGGATCAAAAATTTTAACAACACCTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M48

Protein Analysis

340

Amino Acids

37.38

Weight (kDa)

7.72

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 118 - 312 2.8e-18 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AciI CCGC 3 cut(s) 202, 381, 383
AclWI GGATC 2 cut(s) 289, 1000
AcsI RAATTY 2 cut(s) 125, 999
AcuI CTGAAG 3 cut(s) 57, 67, 279
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 3 cut(s) 435, 909, 953
AfiI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
AgsI TTSAA 4 cut(s) 107, 377, 559, 846
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 3 cut(s) 247, 622, 1012
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 2 cut(s) 289, 1000
ApeKI GCWGC 3 cut(s) 132, 683, 707
ApoI RAATTY 2 cut(s) 125, 999
AsuHPI GGTGA 1 cut(s) 87
BanII GRGCYC 1 cut(s) 919
BauI CACGAG 2 cut(s) 513, 918
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 3 cut(s) 119, 695, 719
BccI CCATC 2 cut(s) 364, 784
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 3 cut(s) 249, 624, 1014
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 748
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 4 cut(s) 278, 492, 497, 761
BfmI CTRYAG 1 cut(s) 852
BglI GCCNNNNNGGC 1 cut(s) 855
BisI GCNGC 4 cut(s) 133, 381, 684, 708
BlsI GCNGC 4 cut(s) 134, 382, 685, 709
BmcAI AGTACT 1 cut(s) 909
Bme1390I CCNGG 3 cut(s) 249, 624, 1014
BmrFI CCNGG 3 cut(s) 249, 624, 1014
BmsI GCATC 4 cut(s) 291, 391, 761, 793
BpiI GAAGAC 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 329, 708
BsaBI GATNNNNATC 1 cut(s) 775
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 381, 568, 604, 623
Bsc4I CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
Bse1I ACTGG 1 cut(s) 905
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 3 cut(s) 249, 624, 1014
BseDI CCNNGG 4 cut(s) 381, 568, 604, 623
BseGI GGATG 3 cut(s) 776, 808, 895
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
BseMII CTCAG 2 cut(s) 67, 659
BseNI ACTGG 1 cut(s) 905
BseXI GCAGC 3 cut(s) 119, 695, 719
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 919
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 624, 629, 736, 781
BsmAI GTCTC 1 cut(s) 748
BsmBI CGTCTC 1 cut(s) 748
BsmFI GGGAC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 919
Bsp143I GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 3 cut(s) 202, 381, 383
BspCNI CTCAG 2 cut(s) 66, 658
BspFNI CGCG 1 cut(s) 383
BspHI TCATGA 1 cut(s) 541
BspPI GGATC 2 cut(s) 289, 1000
BspQI GCTCTTC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 905
BssECI CCNNGG 4 cut(s) 381, 568, 604, 623
BssMI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 2 cut(s) 513, 918
BssT1I CCWWGG 2 cut(s) 568, 604
Bst2BI CACGAG 2 cut(s) 513, 918
Bst2UI CCWGG 3 cut(s) 249, 624, 1014
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 3 cut(s) 513, 651, 966
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 90, 528, 823
BstDEI CTNAG 2 cut(s) 53, 645
BstDSI CCRYGG 2 cut(s) 381, 568
BstF5I GGATG 3 cut(s) 776, 808, 895
BstFNI CGCG 1 cut(s) 383
BstKTI GATC 7 cut(s) 79, 284, 358, 703, 790, 984, 995
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
BstMWI GCNNNNNNNGC 4 cut(s) 129, 301, 536, 855
BstNI CCWGG 3 cut(s) 249, 624, 1014
BstSCI CCNGG 3 cut(s) 247, 622, 1012
BstSFI CTRYAG 1 cut(s) 852
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 3 cut(s) 119, 695, 719
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 381, 568
BtsCI GGATG 3 cut(s) 776, 808, 895
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 1 cut(s) 984
Cac8I GCNNGC 3 cut(s) 90, 528, 823
CciI TCATGA 1 cut(s) 541
Cfr42I CCGCGG 1 cut(s) 384
CseI GACGC 2 cut(s) 124, 197
Csp6I GTAC 3 cut(s) 434, 908, 952
CviAII CATG 4 cut(s) 542, 569, 637, 933
CviQI GTAC 3 cut(s) 434, 908, 952
DdeI CTNAG 2 cut(s) 53, 645
DpnI GATC 7 cut(s) 78, 283, 357, 702, 789, 983, 994
DpnII GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
Eam1104I CTCTTC 3 cut(s) 513, 651, 966
EarI CTCTTC 3 cut(s) 513, 651, 966
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 917
Eco130I CCWWGG 2 cut(s) 568, 604
Eco24I GRGCYC 1 cut(s) 919
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 3 cut(s) 57, 67, 279
EcoICRI GAGCTC 1 cut(s) 917
EcoRII CCWGG 3 cut(s) 247, 622, 1012
EcoT14I CCWWGG 2 cut(s) 568, 604
EcoT22I ATGCAT 2 cut(s) 445, 808
EcoT38I GRGCYC 1 cut(s) 919
ErhI CCWWGG 2 cut(s) 568, 604
Esp3I CGTCTC 1 cut(s) 748
FaeI CATG 4 cut(s) 545, 572, 640, 936
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 310
FatI CATG 4 cut(s) 541, 568, 636, 932
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 4 cut(s) 133, 381, 684, 708
FokI GGATG 3 cut(s) 783, 815, 882
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 4 cut(s) 133, 381, 684, 708
FspBI CTAG 4 cut(s) 278, 492, 497, 761
GluI GCNGC 4 cut(s) 133, 381, 684, 708
HgaI GACGC 2 cut(s) 124, 197
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 4 cut(s) 545, 572, 640, 936
HindIII AAGCTT 1 cut(s) 837
HinfI GANTC 1 cut(s) 244
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 5 cut(s) 76, 320, 340, 355, 648
Hpy188III TCNNGA 8 cut(s) 212, 308, 407, 542, 725, 920, 939, 947
Hpy99I CGWCG 2 cut(s) 173, 191
HpyAV CCTTC 2 cut(s) 338, 722
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 227, 323
HpyCH4V TGCA 7 cut(s) 156, 443, 526, 590, 707, 806, 875
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 301, 536, 855
HpyF3I CTNAG 2 cut(s) 53, 645
HpySE526I ACGT 2 cut(s) 227, 323
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 4 cut(s) 545, 572, 640, 936
Ksp22I TGATCA 1 cut(s) 787
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 4 cut(s) 292, 409, 502, 608
Lsp1109I GCAGC 3 cut(s) 119, 695, 719
LweI GCATC 4 cut(s) 291, 391, 761, 793
MaeI CTAG 4 cut(s) 278, 492, 497, 761
MaeII ACGT 2 cut(s) 227, 323
MaeIII GTNAC 1 cut(s) 286
MalI GATC 7 cut(s) 78, 283, 357, 702, 789, 983, 994
MboI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
MboII GAAGA 6 cut(s) 12, 166, 530, 668, 834, 953
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 5 cut(s) 107, 125, 365, 924, 999
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 41, 58, 175, 194, 219, 876
Mph1103I ATGCAT 2 cut(s) 445, 808
MseI TTAA 1 cut(s) 1004
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 3 cut(s) 249, 624, 1014
MvaI CCWGG 3 cut(s) 249, 624, 1014
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 4 cut(s) 129, 301, 536, 855
NcoI CCATGG 1 cut(s) 568
NdeII GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
NlaIII CATG 4 cut(s) 545, 572, 640, 936
NsiI ATGCAT 2 cut(s) 445, 808
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PfeI GAWTC 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 4 cut(s) 134, 382, 685, 709
Psp124BI GAGCTC 1 cut(s) 919
Psp6I CCWGG 3 cut(s) 247, 622, 1012
PspGI CCWGG 3 cut(s) 247, 622, 1012
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 3 cut(s) 435, 909, 953
RsaNI GTAC 3 cut(s) 434, 908, 952
SacI GAGCTC 1 cut(s) 919
SacII CCGCGG 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 1004
SatI GCNGC 4 cut(s) 133, 381, 684, 708
Sau3AI GATC 7 cut(s) 76, 281, 355, 700, 787, 981, 992
ScaI AGTACT 1 cut(s) 909
ScrFI CCNGG 3 cut(s) 249, 624, 1014
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 4 cut(s) 291, 391, 761, 793
SfcI CTRYAG 1 cut(s) 852
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 308, 723
SmoI CTYRAG 2 cut(s) 308, 723
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 5 cut(s) 107, 125, 365, 924, 999
SsiI CCGC 3 cut(s) 202, 381, 383
SspMI CTAG 4 cut(s) 278, 492, 497, 761
SstI GAGCTC 1 cut(s) 919
StyD4I CCNGG 3 cut(s) 247, 622, 1012
StyI CCWWGG 2 cut(s) 568, 604
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 230, 326
TaqI TCGA 3 cut(s) 186, 213, 679
TasI AATT 5 cut(s) 107, 125, 365, 924, 999
TatI WGTACW 2 cut(s) 907, 951
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 1004
Tru9I TTAA 1 cut(s) 1004
TscAI CASTG 1 cut(s) 991
TseI GCWGC 3 cut(s) 132, 683, 707
TspDTI ATGAA 2 cut(s) 49, 770
TspGWI ACGGA 2 cut(s) 157, 305
TspRI CASTG 1 cut(s) 991
XapI RAATTY 2 cut(s) 125, 999
XspI CTAG 4 cut(s) 278, 492, 497, 761
ZrmI AGTACT 1 cut(s) 909
Zsp2I ATGCAT 2 cut(s) 445, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.