RchiOBHm_Chr1g0313381

K( ) efflux antiporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
469353 .. 469910
558 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGCTGATTCATGTTCAGTTTCTCTGGAATCATGTTGATATATTACTCGCGTCTGTTGGAATATCTCTAGAACAGATAGGCGAATTTGCTTTTGTTCTTTTAAGTCGTGCCTCTAATCTCCATCTAGTCGAGGGGAAATTATATCTGCTGCTGCTTGGAACCACAGCACTTAGTCTGGTAGGATATAATCTTCATTCTGTGGTCTGTGTATGTACCCGAACAGCCTTGAACATTTTCTAA
Functional Annotation

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

6.37

Isoelectric Point (pI)

20.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 148, 151
ApoI RAATTY 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 135, 138
BccI CCATC 1 cut(s) 129
BfaI CTAG 2 cut(s) 68, 125
BisI GCNGC 2 cut(s) 149, 152
BlsI GCNGC 2 cut(s) 150, 153
BmiI GGNNCC 1 cut(s) 160
BseXI GCAGC 2 cut(s) 135, 138
Bsh1236I CGCG 1 cut(s) 50
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 50
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 135, 138
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 11, 32
CviJI RGCY 1 cut(s) 224
CviKI_1 RGCY 1 cut(s) 224
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 170
FaeI CATG 2 cut(s) 14, 35
FaiI YATR 6 cut(s) 12, 33, 41, 142, 186, 211
FatI CATG 2 cut(s) 10, 31
Fnu4HI GCNGC 2 cut(s) 149, 152
Fsp4HI GCNGC 2 cut(s) 149, 152
FspBI CTAG 2 cut(s) 68, 125
GluI GCNGC 2 cut(s) 149, 152
HgaI GACGC 1 cut(s) 39
Hin1II CATG 2 cut(s) 14, 35
HinfI GANTC 2 cut(s) 7, 28
Hpy188III TCNNGA 2 cut(s) 25, 68
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 2 cut(s) 14, 35
LpnPI CCDG 2 cut(s) 10, 161
Lsp1109I GCAGC 2 cut(s) 135, 138
MaeI CTAG 2 cut(s) 68, 125
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 83, 137
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 2 cut(s) 121, 124
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 1 cut(s) 101
MvnI CGCG 1 cut(s) 50
NlaIII CATG 2 cut(s) 14, 35
NlaIV GGNNCC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 7, 28
PkrI GCNGC 2 cut(s) 150, 153
PspN4I GGNNCC 1 cut(s) 160
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 2 cut(s) 149, 152
Sse9I AATT 2 cut(s) 83, 137
SspMI CTAG 2 cut(s) 68, 125
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 83, 137
TfiI GAWTC 2 cut(s) 7, 28
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 2 cut(s) 148, 151
TspDTI ATGAA 1 cut(s) 182
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 2 cut(s) 68, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.