Rh5CG213800

CST complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015721
Physical Location & Seq
Forward (+)
21642149 .. 21649470
7322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG213800.1

Sequence Viewer

Length: 741 bp
ATGGTGAATTACTGTCAACGGTGTCATATAGCCTCACAATCACAGAGTTCCTTGGGGAAGTTCATCGAGTCCTTAGCATTTTCTTCCAGATTATGGGTATTGCTGGTTTCCTCGTATTTCCGGAAAAAGTTTGCTGGTATCTTATCTGAGAAGGAAATTTTGGGCTCAAAACATAAGGGAGGATTAGTTGAGATGTTTGCTAGTTCACAGATGCCTTCGTCAAAGCATCAAACTCAGCCGGGAGTATTCATGGAATTTTGCAAGCATGATTCCTGTGCCTGTGGTTGTGAGCCATACATAGATAATCTGACTCTGTTTCTCTGGAATCATGTTGATATATTACTCGCGTCTGTCATCTTAGTTATCATCATAAAAACAATTATTATAACCATGGTTGTCAAGGGATTCGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAATCGTGCCTCTAATCTCCATCTAGTCGAGGAGAAATCATATCTGCTGCTGATTGGAACCACAACACTTAGTCTGATTCTTTCTCTGCTATTTGAACGATCTGTAAATTCTGATGCCCCGAATCGTCACAAGCAGATTGGCTTTAGCTTTAAAGGCCGGTCGCCGCAAAATCAGTTGACTGGTGGCTGGGTCTATTATTCAAATCTCCAAAAATGCTTGAAGGTGTTGGTGCATTTCAAAATCTACCAATGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CTC1_2

Protein Analysis

246

Amino Acids

27.78

Weight (kDa)

9.31

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 105 - 192 7.3e-13 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 93
AccII CGCG 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 1 cut(s) 647
AcsI RAATTY 4 cut(s) 156, 254, 464, 589
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 4 cut(s) 578, 684, 703, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 630
AluI AGCT 1 cut(s) 630
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 529
ApoI RAATTY 4 cut(s) 156, 254, 464, 589
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 516
BccI CCATC 1 cut(s) 510
BciVI GTATCC 1 cut(s) 404
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 4 cut(s) 201, 434, 449, 506
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 2 cut(s) 530, 647
BlsI GCNGC 2 cut(s) 531, 648
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 3 cut(s) 201, 235, 586
Bpu10I CCTNAGC 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 51, 390
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 667
BseAI TCCGGA 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 51, 390
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 138, 248
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 516
BseYI CCCAGC 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 644
BshFI GGCC 1 cut(s) 639
BsiEI CGRYCG 1 cut(s) 644
BsiSI CCGG 3 cut(s) 121, 239, 640
BslI CCNNNNNNNGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 167
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 581
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 647
BspANI GGCC 1 cut(s) 639
BspCNI CTCAG 2 cut(s) 139, 247
BspEI TCCGGA 1 cut(s) 120
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 1 cut(s) 667
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 2 cut(s) 51, 390
BssMI GATC 1 cut(s) 581
BssT1I CCWWGG 2 cut(s) 51, 390
Bst4CI ACNGT 2 cut(s) 14, 21
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 5 cut(s) 73, 147, 234, 358, 551
BstDSI CCRYGG 1 cut(s) 390
BstFNI CGCG 1 cut(s) 347
BstKTI GATC 1 cut(s) 584
BstMBI GATC 1 cut(s) 581
BstMCI CGRYCG 1 cut(s) 644
BstMWI GCNNNNNNNGC 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 516
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 639
BtgI CCRYGG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 639
CseI GACGC 1 cut(s) 336
CviAII CATG 4 cut(s) 250, 266, 329, 391
CviJI RGCY 8 cut(s) 32, 165, 238, 292, 624, 630, 639, 669
CviKI_1 RGCY 8 cut(s) 32, 165, 238, 292, 624, 630, 639, 669
DdeI CTNAG 5 cut(s) 73, 147, 234, 358, 551
DpnI GATC 1 cut(s) 583
DpnII GATC 1 cut(s) 581
DraI TTTAAA 2 cut(s) 483, 634
Eco130I CCWWGG 2 cut(s) 51, 390
Eco24I GRGCYC 1 cut(s) 167
EcoT14I CCWWGG 2 cut(s) 51, 390
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 2 cut(s) 51, 390
FaeI CATG 4 cut(s) 253, 269, 332, 394
FatI CATG 4 cut(s) 249, 265, 328, 390
Fnu4HI GCNGC 2 cut(s) 530, 647
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 530, 647
FspBI CTAG 4 cut(s) 201, 434, 449, 506
GluI GCNGC 2 cut(s) 530, 647
GsaI CCCAGC 1 cut(s) 673
HaeIII GGCC 1 cut(s) 639
HapII CCGG 3 cut(s) 121, 239, 640
HgaI GACGC 1 cut(s) 336
Hin1II CATG 4 cut(s) 253, 269, 332, 394
HincII GTYRAC 2 cut(s) 17, 660
HindII GTYRAC 2 cut(s) 17, 660
HinfI GANTC 7 cut(s) 68, 269, 310, 325, 405, 559, 604
HpaII CCGG 3 cut(s) 121, 239, 640
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 17, 206, 660
Hpy188I TCNGA 5 cut(s) 148, 309, 410, 558, 595
Hpy188III TCNNGA 3 cut(s) 87, 121, 322
Hpy8I GTNNAC 3 cut(s) 17, 206, 660
HpyAV CCTTC 3 cut(s) 145, 225, 697
HpyCH4III ACNGT 2 cut(s) 14, 21
HpyCH4V TGCA 2 cut(s) 261, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 636
HpyF3I CTNAG 5 cut(s) 73, 147, 234, 358, 551
Hsp92II CATG 4 cut(s) 253, 269, 332, 394
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 581
Lsp1109I GCAGC 1 cut(s) 516
LweI GCATC 3 cut(s) 201, 235, 586
MaeI CTAG 4 cut(s) 201, 434, 449, 506
MaeIII GTNAC 1 cut(s) 608
MalI GATC 1 cut(s) 583
MboI GATC 1 cut(s) 581
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 6 cut(s) 7, 156, 254, 378, 464, 589
MlyI GAGTC 2 cut(s) 77, 304
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 43, 121, 173, 502, 505
MroI TCCGGA 1 cut(s) 120
MseI TTAA 2 cut(s) 482, 633
MspI CCGG 3 cut(s) 121, 239, 640
MspR9I CCNGG 1 cut(s) 240
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 636
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 390
NdeII GATC 1 cut(s) 581
NlaIII CATG 4 cut(s) 253, 269, 332, 394
NlaIV GGNNCC 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 608
PfeI GAWTC 5 cut(s) 269, 325, 405, 559, 604
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 2 cut(s) 531, 648
PleI GAGTC 2 cut(s) 76, 304
PpsI GAGTC 2 cut(s) 76, 304
PsiI TTATAA 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 669
PspN4I GGNNCC 1 cut(s) 541
SaqAI TTAA 2 cut(s) 482, 633
SatI GCNGC 2 cut(s) 530, 647
Sau3AI GATC 1 cut(s) 581
SchI GAGTC 2 cut(s) 77, 304
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 167
SetI ASST 2 cut(s) 632, 708
SfaNI GCATC 3 cut(s) 201, 235, 586
Sse9I AATT 6 cut(s) 7, 156, 254, 378, 464, 589
SsiI CCGC 1 cut(s) 647
SspMI CTAG 4 cut(s) 201, 434, 449, 506
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 51, 390
TaaI ACNGT 2 cut(s) 14, 21
TaqI TCGA 2 cut(s) 66, 510
TasI AATT 6 cut(s) 7, 156, 254, 378, 464, 589
TauI GCSGC 1 cut(s) 649
TfiI GAWTC 5 cut(s) 269, 325, 405, 559, 604
Tru1I TTAA 2 cut(s) 482, 633
Tru9I TTAA 2 cut(s) 482, 633
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 52, 238
Van91I CCANNNNNTGG 1 cut(s) 93
XapI RAATTY 4 cut(s) 156, 254, 464, 589
XspI CTAG 4 cut(s) 201, 434, 449, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.