Rmu_co8314265.1_g000001

K( ) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314265.1
OG0015721
Physical Location & Seq
Forward (+)
1 .. 532
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314265.1_g000001.1.cds

Sequence Viewer

Length: 219 bp
gggaaattatatctgctgctgcttggaaccacagcacttagtctggtgaccactccttttctattcaagctaatccctggtttagtgcatcttggtgtacttttgaggtggttccctccagacggtgctgttgagattggatttaagggagacaacctgcgcacggatagtggtaaacagcgtgttattttgatggtccgggaatcacacgattcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

72

Amino Acids

7.93

Weight (kDa)

9.4

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 165
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 122, 163
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 16, 19
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 3, 6
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 17, 20
BlsI GCNGC 2 cut(s) 18, 21
Bme1390I CCNGG 2 cut(s) 78, 200
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 28, 113
BmrFI CCNGG 2 cut(s) 78, 200
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 163
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 122, 163
BseXI GCAGC 2 cut(s) 3, 6
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 122, 163
BsmAI GTCTC 1 cut(s) 144
BspHI TCATGA 1 cut(s) 215
BspLI GGNNCC 2 cut(s) 28, 113
BspMI ACCTGC 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 46
BstHHI GCGC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 78
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 76, 198
BstV1I GCAGC 2 cut(s) 3, 6
BveI ACCTGC 1 cut(s) 165
CciI TCATGA 1 cut(s) 215
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 98
CviAII CATG 1 cut(s) 216
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 219
FaiI YATR 2 cut(s) 10, 217
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 17, 20
Fsp4HI GCNGC 2 cut(s) 17, 20
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 17, 20
GsuI CTGGAG 1 cut(s) 102
HapII CCGG 1 cut(s) 199
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 219
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 203, 212
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 98, 176
Hpy188III TCNNGA 2 cut(s) 119, 216
Hpy8I GTNNAC 2 cut(s) 98, 176
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 1 cut(s) 219
HspAI GCGC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 29, 63, 90, 132, 170, 212
Lsp1109I GCAGC 2 cut(s) 3, 6
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 46
MluCI AATT 1 cut(s) 5
MnlI CCTC 2 cut(s) 99, 126
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 2 cut(s) 78, 200
MvaI CCWGG 1 cut(s) 78
NciI CCSGG 1 cut(s) 200
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 2 cut(s) 28, 113
NmuCI GTSAC 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 161
PagI TCATGA 1 cut(s) 215
PfeI GAWTC 2 cut(s) 203, 212
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 2 cut(s) 18, 21
Psp6I CCWGG 1 cut(s) 76
PspEI GGTNACC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 28, 113
PspPI GGNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 17, 20
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 78, 200
SetI ASST 3 cut(s) 72, 110, 159
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 76, 198
TaaI ACNGT 1 cut(s) 125
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 2 cut(s) 203, 212
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 16, 19
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.