RLG00000013881

K( ) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015721
Physical Location & Seq
Forward (+)
43494052 .. 43495954
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013881

Sequence Viewer

Length: 438 bp
ATGACACAACAAATTGAACCTATTCGCAACCTTTTTGCTGCCCTTTTCCTTGCCAGCATTGGGATGCTGATTCATGTTCAGTTTCTCTGGAATCATGTTGATATATTACTCGCGTTTGTCATCTTAGTCATCATAAAAACAATTATTATAACCATGGTTGTCAAGGGATTCGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAGTCGTGCCTCTAATCTCCATGTAGTTGAGGGGAAATTATATCTGCTGCTGCTTGGAACCACAGCTCTTAGTCTGGTGACCACTCCTTTTCTATTCAAGCTAATCCCTGTTAATGAGCTTTGGATGGAGACAGGTTTTGGAGGATGCGTGAGTGCTACATCCATGGACATACTACTATCTGCGAGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

146

Amino Acids

15.89

Weight (kDa)

6.82

Isoelectric Point (pI)

23.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 1 - 115 1.5e-18 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AccII CGCG 1 cut(s) 113
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 2 cut(s) 17, 343
AluBI AGCT 3 cut(s) 311, 346, 364
AluI AGCT 3 cut(s) 311, 346, 364
Alw26I GTCTC 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 38, 292, 295
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 334
BbvI GCAGC 3 cut(s) 25, 279, 282
BccI CCATC 1 cut(s) 364
BciVI GTATCC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 197, 212
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 3 cut(s) 39, 293, 296
BlsI GCNGC 3 cut(s) 40, 294, 297
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 2 cut(s) 54, 380
BsaJI CCNNGG 2 cut(s) 153, 408
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 153, 408
BseGI GGATG 4 cut(s) 69, 375, 395, 404
BseLI CCNNNNNNNGG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 25, 279, 282
Bsh1236I CGCG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 368
Bsp19I CCATGG 2 cut(s) 153, 408
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 153, 408
BssT1I CCWWGG 2 cut(s) 153, 408
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 124, 314
BstDSI CCRYGG 2 cut(s) 153, 408
BstEII GGTNACC 1 cut(s) 322
BstF5I GGATG 4 cut(s) 69, 375, 395, 404
BstFNI CGCG 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 322
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 25, 279, 282
BsuI GTATCC 1 cut(s) 167
BtgI CCRYGG 2 cut(s) 153, 408
BtsCI GGATG 4 cut(s) 69, 375, 395, 404
Cac8I GCNNGC 1 cut(s) 55
CviAII CATG 5 cut(s) 74, 95, 154, 266, 409
CviJI RGCY 3 cut(s) 311, 346, 364
CviKI_1 RGCY 3 cut(s) 311, 346, 364
DdeI CTNAG 2 cut(s) 124, 314
Eco130I CCWWGG 2 cut(s) 153, 408
Eco91I GGTNACC 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 153, 408
ErhI CCWWGG 2 cut(s) 153, 408
FaeI CATG 5 cut(s) 77, 98, 157, 269, 412
FatI CATG 5 cut(s) 73, 94, 153, 265, 408
Fnu4HI GCNGC 3 cut(s) 39, 293, 296
FokI GGATG 4 cut(s) 76, 382, 391, 402
Fsp4HI GCNGC 3 cut(s) 39, 293, 296
FspBI CTAG 2 cut(s) 197, 212
GluI GCNGC 3 cut(s) 39, 293, 296
Hin1II CATG 5 cut(s) 77, 98, 157, 269, 412
HinfI GANTC 3 cut(s) 70, 91, 168
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 88, 435
HpyF3I CTNAG 2 cut(s) 124, 314
Hsp92II CATG 5 cut(s) 77, 98, 157, 269, 412
LpnPI CCDG 5 cut(s) 67, 73, 305, 363, 366
Lsp1109I GCAGC 3 cut(s) 25, 279, 282
LweI GCATC 2 cut(s) 54, 380
MaeI CTAG 2 cut(s) 197, 212
MaeIII GTNAC 1 cut(s) 322
MluCI AATT 4 cut(s) 12, 141, 227, 281
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 265, 268, 380
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 2 cut(s) 245, 357
MslI CAYNNNNRTG 1 cut(s) 62
MvnI CGCG 1 cut(s) 113
NcoI CCATGG 2 cut(s) 153, 408
NlaIII CATG 5 cut(s) 77, 98, 157, 269, 412
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 70, 91, 168
PkrI GCNGC 3 cut(s) 40, 294, 297
PsiI TTATAA 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 2 cut(s) 245, 357
SatI GCNGC 3 cut(s) 39, 293, 296
SetI ASST 6 cut(s) 22, 33, 313, 348, 366, 382
SfaNI GCATC 2 cut(s) 54, 380
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 4 cut(s) 12, 141, 227, 281
SspMI CTAG 2 cut(s) 197, 212
StyI CCWWGG 2 cut(s) 153, 408
TasI AATT 4 cut(s) 12, 141, 227, 281
TfiI GAWTC 3 cut(s) 70, 91, 168
Tru1I TTAA 2 cut(s) 245, 357
Tru9I TTAA 2 cut(s) 245, 357
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 38, 292, 295
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 62
XapI RAATTY 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 2 cut(s) 197, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.