Rh3CG058000

K( ) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015721
Physical Location & Seq
Forward (+)
4017603 .. 4018146
544 bp
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UTR
Exon/CDS
Intron
Rh3CG058000.1

Sequence Viewer

Length: 219 bp
ATGGTTGTCAAGGGATTCGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAATCGTGCCTCTAATCTCCATCTAGTCGAGGAGAAATCATATCTGCTGCTGATTGGAACCACAACACTTAGTCTGGTGACCACTCCTTTTCTATTCAAGCTAATCCCTATTAATGAGCTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

8.12

Isoelectric Point (pI)

11.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 3 - 64 7.7e-09 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 74
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 2 cut(s) 193, 211
AluI AGCT 2 cut(s) 193, 211
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 74
AseI ATTAAT 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 120
BciVI GTATCC 1 cut(s) 14
BfaI CTAG 3 cut(s) 44, 59, 116
BfuI GTATCC 1 cut(s) 14
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 161
BstEII GGTNACC 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 14
CviJI RGCY 2 cut(s) 193, 211
CviKI_1 RGCY 2 cut(s) 193, 211
DdeI CTNAG 1 cut(s) 161
DraI TTTAAA 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
FaiI YATR 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 3 cut(s) 44, 59, 116
GluI GCNGC 1 cut(s) 140
HinfI GANTC 1 cut(s) 15
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 161
LpnPI CCDG 1 cut(s) 152
Lsp1109I GCAGC 1 cut(s) 126
MaeI CTAG 3 cut(s) 44, 59, 116
MaeIII GTNAC 1 cut(s) 169
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 2 cut(s) 112, 115
MseI TTAA 2 cut(s) 92, 204
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 92, 204
SatI GCNGC 1 cut(s) 140
SetI ASST 2 cut(s) 195, 213
SgeI CNNG 8 cut(s) 22, 56, 71, 110, 128, 133, 179, 202
Sse9I AATT 1 cut(s) 74
SspMI CTAG 3 cut(s) 44, 59, 116
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 74
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 92, 204
Tru9I TTAA 2 cut(s) 92, 204
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 169
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 74
XspI CTAG 3 cut(s) 44, 59, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.