Rh3BG058800

K( ) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015721
Physical Location & Seq
Forward (+)
4017603 .. 4018916
1314 bp
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UTR
Exon/CDS
Intron
Rh3BG058800.1

Sequence Viewer

Length: 213 bp
ATGGTTGTCAAGGGATTCGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAATCGTGCCTCTAATCTCCATCTAGTCGAGGAGAAATCATATCTGCTGCTGATTGGAACCACAACACTTAGTCTGTTCCAATACTGTGTAGGATGGAGACATGTTTTGGAGGATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

70

Amino Acids

7.84

Weight (kDa)

6.7

Isoelectric Point (pI)

14.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 3 - 57 2e-07 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 74
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 120, 180
BciVI GTATCC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 3 cut(s) 44, 59, 116
BfuI GTATCC 1 cut(s) 14
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 196
BsaXI ACNNNNNCTCC 1 cut(s) 194
BseGI GGATG 2 cut(s) 191, 211
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 191, 211
BstMAI GTCTC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 191, 211
CviAII CATG 1 cut(s) 194
DdeI CTNAG 1 cut(s) 161
DraI TTTAAA 1 cut(s) 93
FaeI CATG 1 cut(s) 197
FaiI YATR 2 cut(s) 133, 195
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 3 cut(s) 44, 59, 116
GluI GCNGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 197
HinfI GANTC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 20
HpyCH4III ACNGT 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 44, 59, 116
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 3 cut(s) 112, 115, 196
MseI TTAA 1 cut(s) 92
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 151
NspI RCATGY 1 cut(s) 197
PciI ACATGT 1 cut(s) 193
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 141
PscI ACATGT 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 196
SgeI CNNG 7 cut(s) 22, 56, 71, 110, 128, 133, 206
Sse9I AATT 1 cut(s) 74
SspMI CTAG 3 cut(s) 44, 59, 116
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 74
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 1 cut(s) 139
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 197
XspI CTAG 3 cut(s) 44, 59, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.