Rh7DG400400

K( ) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015721
Physical Location & Seq
Reverse (-)
55028321 .. 55031091
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG400400.1

Sequence Viewer

Length: 312 bp
ATGCTGATTCATGTTCAGTTTCTCTGGAATCATGTTGATATATTTCTCGCGTCTGTCATCTTAGTTATCATCATAAAAACAATTATTATAACCATGGTTGTCAAGGGATTTGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAGTCGTGCCTCTAATCTCCATCTAGTCGAGGGGAAATTATATCTGCTGCTGCTTGGAACCACTGCACTTAGTCTGGTGACCACCCCTTTTCTATTCAAGCTAATCCCTGTTAATGAGCTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

103

Amino Acids

11.53

Weight (kDa)

9.22

Isoelectric Point (pI)

13.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 2 - 95 3e-14 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccII CGCG 1 cut(s) 50
AcsI RAATTY 1 cut(s) 167
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 2 cut(s) 286, 304
AluI AGCT 2 cut(s) 286, 304
ApeKI GCWGC 2 cut(s) 232, 235
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 274
BbvI GCAGC 2 cut(s) 219, 222
BccI CCATC 1 cut(s) 213
BciVI GTATCC 1 cut(s) 107
BfaI CTAG 3 cut(s) 137, 152, 209
BfuI GTATCC 1 cut(s) 107
BisI GCNGC 2 cut(s) 233, 236
BlsI GCNGC 2 cut(s) 234, 237
BmiI GGNNCC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 219, 222
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 50
Bsp19I CCATGG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 61, 254
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 262
BstFNI CGCG 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 262
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 219, 222
BsuI GTATCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
CseI GACGC 1 cut(s) 39
CviAII CATG 3 cut(s) 11, 32, 94
CviJI RGCY 2 cut(s) 286, 304
CviKI_1 RGCY 2 cut(s) 286, 304
DdeI CTNAG 2 cut(s) 61, 254
Eco130I CCWWGG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 14, 35, 97
FaiI YATR 7 cut(s) 12, 33, 41, 74, 89, 95, 226
FatI CATG 3 cut(s) 10, 31, 93
Fnu4HI GCNGC 2 cut(s) 233, 236
Fsp4HI GCNGC 2 cut(s) 233, 236
FspBI CTAG 3 cut(s) 137, 152, 209
GluI GCNGC 2 cut(s) 233, 236
HgaI GACGC 1 cut(s) 39
Hin1II CATG 3 cut(s) 14, 35, 97
HinfI GANTC 2 cut(s) 7, 28
HphI GGTGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 61, 254
Hsp92II CATG 3 cut(s) 14, 35, 97
LpnPI CCDG 3 cut(s) 10, 245, 306
Lsp1109I GCAGC 2 cut(s) 219, 222
MaeI CTAG 3 cut(s) 137, 152, 209
MaeIII GTNAC 1 cut(s) 262
MluCI AATT 3 cut(s) 81, 167, 221
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 205, 208
MseI TTAA 2 cut(s) 185, 297
MvnI CGCG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 93
NlaIII CATG 3 cut(s) 14, 35, 97
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 7, 28
PkrI GCNGC 2 cut(s) 234, 237
PsiI TTATAA 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 185, 297
SatI GCNGC 2 cut(s) 233, 236
SetI ASST 2 cut(s) 288, 306
Sse9I AATT 3 cut(s) 81, 167, 221
SspMI CTAG 3 cut(s) 137, 152, 209
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 213
TasI AATT 3 cut(s) 81, 167, 221
TfiI GAWTC 2 cut(s) 7, 28
Tru1I TTAA 2 cut(s) 185, 297
Tru9I TTAA 2 cut(s) 185, 297
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 232, 235
Tsp45I GTSAC 1 cut(s) 262
TspRI CASTG 1 cut(s) 253
XapI RAATTY 1 cut(s) 167
XspI CTAG 3 cut(s) 137, 152, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.