Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015721

Physical Location & Seq

Genomic Coordinates Forward (+)

4273984 .. 4277455

Gene Structure 3472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTGATTCATGTTCAGTTTCTCTGGAATCATGTTGATATATTACTCGCGTCTGTCATCTTAGTTATCATCATAAAAACAATTATTATAACCATGGTTGTCAAGGGATTCGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAGTCGTGCCTTTAATCTCCATCTAGTCGAGGGGAAATTATATCTGCTGCTGCTTGGAACCACAACACTTAGTCTGGTGACCACTTCTTTTCTATTCAAGCTAATCCCTGTTATTGAGCTTTGGATGGAGACAGGTTTTGGAGGATGCGTGAGTGCTACATCCATGGAAATACTACTGAGTATCTGCGAGTTCCTGATGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

129

Amino Acids

14.28

Weight (kDa)

6.25

Isoelectric Point (pI)

20.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	2 - 93	7.1e-13	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015721)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g03490
rosa_chinensis	RchiOBHm_Chr1g0313381 RchiOBHm_Chr2g0155061
rosa_laevigata	RLG00000013881
rosa_multiflora	Rmu_co8314265.1_g000001 Rmu_sc0004107.1_g000002 Rmu_sc0036600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003480
rosa_samantha	Rh1AG003100 Rh2AG445300 Rh3BG058800 Rh3CG058000 Rh3DG059400 Rh5CG213800 Rh7DG400400
rosa_wichuraiana	Rw5G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccII	CGCG	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	2 cut(s)	286, 304
AluI	AGCT	2 cut(s)	286, 304
Alw26I	GTCTC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	232, 235
ApoI	RAATTY	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	219, 222
BccI	CCATC	3 cut(s)	213, 304, 376
BciVI	GTATCC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	137, 152, 209
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	233, 236
BlsI	GCNGC	2 cut(s)	234, 237
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	93, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
BseDI	CCNNGG	2 cut(s)	93, 348
BseGI	GGATG	3 cut(s)	315, 335, 344
BseMII	CTCAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	219, 222
Bsh1236I	CGCG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	308
Bsp19I	CCATGG	2 cut(s)	93, 348
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	93, 348
BssT1I	CCWWGG	2 cut(s)	93, 348
BstDEI	CTNAG	3 cut(s)	61, 254, 362
BstDSI	CCRYGG	2 cut(s)	93, 348
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	315, 335, 344
BstFNI	CGCG	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	219, 222
BsuI	GTATCC	1 cut(s)	107
BtgI	CCRYGG	2 cut(s)	93, 348
BtsCI	GGATG	3 cut(s)	315, 335, 344
CseI	GACGC	1 cut(s)	39
CviAII	CATG	4 cut(s)	11, 32, 94, 349
CviJI	RGCY	2 cut(s)	286, 304
CviKI_1	RGCY	2 cut(s)	286, 304
DdeI	CTNAG	3 cut(s)	61, 254, 362
Eco130I	CCWWGG	2 cut(s)	93, 348
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	93, 348
ErhI	CCWWGG	2 cut(s)	93, 348
FaeI	CATG	4 cut(s)	14, 35, 97, 352
FaiI	YATR	8 cut(s)	12, 33, 41, 74, 89, 95, 226, 350
FatI	CATG	4 cut(s)	10, 31, 93, 348
Fnu4HI	GCNGC	2 cut(s)	233, 236
FokI	GGATG	3 cut(s)	322, 331, 342
Fsp4HI	GCNGC	2 cut(s)	233, 236
FspBI	CTAG	3 cut(s)	137, 152, 209
GluI	GCNGC	2 cut(s)	233, 236
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	14, 35, 97, 352
HinfI	GANTC	3 cut(s)	7, 28, 108
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	25, 379
HpyF3I	CTNAG	3 cut(s)	61, 254, 362
Hsp92II	CATG	4 cut(s)	14, 35, 97, 352
LpnPI	CCDG	4 cut(s)	10, 245, 303, 306
Lsp1109I	GCAGC	2 cut(s)	219, 222
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	3 cut(s)	137, 152, 209
MaeIII	GTNAC	1 cut(s)	262
MluCI	AATT	3 cut(s)	81, 167, 221
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	208, 320
MseI	TTAA	2 cut(s)	185, 198
MvnI	CGCG	1 cut(s)	50
NcoI	CCATGG	2 cut(s)	93, 348
NlaIII	CATG	4 cut(s)	14, 35, 97, 352
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	7, 28, 108
PkrI	GCNGC	2 cut(s)	234, 237
PsiI	TTATAA	1 cut(s)	89
PspEI	GGTNACC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	185, 198
SatI	GCNGC	2 cut(s)	233, 236
SetI	ASST	3 cut(s)	288, 306, 322
SfaNI	GCATC	1 cut(s)	320
Sse9I	AATT	3 cut(s)	81, 167, 221
SspMI	CTAG	3 cut(s)	137, 152, 209
StyI	CCWWGG	2 cut(s)	93, 348
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	81, 167, 221
TfiI	GAWTC	3 cut(s)	7, 28, 108
Tru1I	TTAA	2 cut(s)	185, 198
Tru9I	TTAA	2 cut(s)	185, 198
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	232, 235
Tsp45I	GTSAC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	3 cut(s)	137, 152, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.