Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015721

Physical Location & Seq

Genomic Coordinates Reverse (-)

72085487 .. 72086430

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCTGATTCATGTTCAGTTTCTCTGGAATCATGTTGATATATTTCTCGCGTCTGTCATCTTAGTTATCATCATAAAAACAATTATTATAACCATGGTTGTCAAGGGATTTGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGCACAGATAGGCGAATTTGCTTTTGTTCTTTTAAGTCGTGCCTCTAATCTCCATCTAGTCGAGGGGAAATTATATCTGCTGCTGCTTGGAACCACTGCACTTAGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

87

Amino Acids

9.63

Weight (kDa)

9.3

Isoelectric Point (pI)

10.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	2 - 87	1.2e-12	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015721)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g03490
rosa_chinensis	RchiOBHm_Chr1g0313381 RchiOBHm_Chr2g0155061
rosa_laevigata	RLG00000013881
rosa_multiflora	Rmu_co8314265.1_g000001 Rmu_sc0004107.1_g000002 Rmu_sc0036600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003480
rosa_samantha	Rh1AG003100 Rh2AG445300 Rh3BG058800 Rh3CG058000 Rh3DG059400 Rh5CG213800 Rh7DG400400
rosa_wichuraiana	Rw5G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccII	CGCG	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	232, 235
ApoI	RAATTY	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	219, 222
BccI	CCATC	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	137, 152, 209
BfuI	GTATCC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	233, 236
BlsI	GCNGC	2 cut(s)	234, 237
BmiI	GGNNCC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	219, 222
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	61, 254
BstDSI	CCRYGG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	219, 222
BsuI	GTATCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CseI	GACGC	1 cut(s)	39
CviAII	CATG	3 cut(s)	11, 32, 94
DdeI	CTNAG	2 cut(s)	61, 254
Eco130I	CCWWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	14, 35, 97
FaiI	YATR	7 cut(s)	12, 33, 41, 74, 89, 95, 226
FatI	CATG	3 cut(s)	10, 31, 93
Fnu4HI	GCNGC	2 cut(s)	233, 236
Fsp4HI	GCNGC	2 cut(s)	233, 236
FspBI	CTAG	3 cut(s)	137, 152, 209
GluI	GCNGC	2 cut(s)	233, 236
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	14, 35, 97
HinfI	GANTC	2 cut(s)	7, 28
Hpy188III	TCNNGA	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	251
HpyF3I	CTNAG	2 cut(s)	61, 254
Hsp92II	CATG	3 cut(s)	14, 35, 97
LpnPI	CCDG	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	219, 222
MaeI	CTAG	3 cut(s)	137, 152, 209
MluCI	AATT	3 cut(s)	81, 167, 221
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	205, 208
MseI	TTAA	1 cut(s)	185
MvnI	CGCG	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	93
NlaIII	CATG	3 cut(s)	14, 35, 97
NlaIV	GGNNCC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	7, 28
PkrI	GCNGC	2 cut(s)	234, 237
PsiI	TTATAA	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	233, 236
Sse9I	AATT	3 cut(s)	81, 167, 221
SspMI	CTAG	3 cut(s)	137, 152, 209
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	81, 167, 221
TfiI	GAWTC	2 cut(s)	7, 28
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	232, 235
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	3 cut(s)	137, 152, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.