Rh1AG003100

K( ) efflux antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015721
Physical Location & Seq
Forward (+)
466649 .. 481129
14481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG003100.1

Sequence Viewer

Length: 648 bp
ATGCTGATTCATGTTCAGTTTCTCTGGAATCATGTTGATATATTACTCGCGTCTGTCATCTTAGTTATCATCATAAAAACAATTATTATAACCATGGTTGTCAAGGGATTCGGATACAACAACAAAACATCATTCCTAGTTGGAATATCTCTAGAACAGATAGGCGAATTTGCTTTTGTTCTTTTAAGTCGTGCCTCTAATCTCCATCTAGTCGAGGGGAAATTATATCTGCTGCTGCTTGGAACCACAGCACTTAGTCTGGATGGAGACAGGTTTTGGAGGATGTGTGAGTGCTACATCCATGGAAATACTACTAAGTATCTGCAAGTTCCTGATGGGGTAGTTCCTAGTGGCGTTGCCCTTAATAAGTACGATTTGGATCAATTGTTAGAGTTCGGTGGTCTGCGGCCCAAACGGGGACGGCTAAAACTGTACTTGTGGCTCAAGTTATCGATGGAGAGACTGAACGCAGAGGCGATGCTCTATAACTCAGGGACGCAGCCTTCATTATGGAGGTCGATCTCGATTCGGCATGATTTAGGCTCAATCATTCATCTCCGAATGGCCGAGTATTTGGGGCGTGAACCTAGTTACTGTGAGATGGGAGTAGTACAAGATTTAGCGAATTTAGCACCATTTCTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0098655
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

215

Amino Acids

24.33

Weight (kDa)

8.41

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 2 - 87 3.4e-12 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AccII CGCG 1 cut(s) 50
AciI CCGC 1 cut(s) 406
AclWI GGATC 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 2 cut(s) 167, 625
AfaI GTAC 3 cut(s) 371, 434, 612
AfiI CCNNNNNNNGG 1 cut(s) 416
Alw26I GTCTC 2 cut(s) 261, 454
AlwI GGATC 1 cut(s) 387
AoxI GGCC 2 cut(s) 407, 564
ApeKI GCWGC 3 cut(s) 232, 235, 499
ApoI RAATTY 2 cut(s) 167, 625
AspS9I GGNCC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 219, 222, 511
BccI CCATC 5 cut(s) 213, 257, 329, 448, 595
BceAI ACGGC 1 cut(s) 437
BciVI GTATCC 1 cut(s) 107
BcoDI GTCTC 2 cut(s) 261, 454
BfaI CTAG 6 cut(s) 137, 152, 209, 348, 588, 646
BfuI GTATCC 1 cut(s) 107
BisI GCNGC 4 cut(s) 233, 236, 407, 500
BlsI GCNGC 4 cut(s) 234, 237, 408, 501
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 428
Bsa29I ATCGAT 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 93, 301
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 93, 301
BseGI GGATG 3 cut(s) 268, 288, 297
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 504
BseXI GCAGC 3 cut(s) 219, 222, 511
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 409, 566
BshVI ATCGAT 1 cut(s) 452
BslFI GGGAC 2 cut(s) 432, 508
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 261, 454
BsmFI GGGAC 2 cut(s) 432, 508
BsnI GGCC 2 cut(s) 409, 566
Bsp143I GATC 2 cut(s) 379, 519
Bsp19I CCATGG 2 cut(s) 93, 301
BspACI CCGC 1 cut(s) 406
BspANI GGCC 2 cut(s) 409, 566
BspCNI CTCAG 1 cut(s) 503
BspDI ATCGAT 1 cut(s) 452
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 387
BssECI CCNNGG 2 cut(s) 93, 301
BssMI GATC 2 cut(s) 379, 519
BssT1I CCWWGG 2 cut(s) 93, 301
Bst4CI ACNGT 2 cut(s) 432, 596
BstDEI CTNAG 4 cut(s) 61, 254, 315, 490
BstDSI CCRYGG 2 cut(s) 93, 301
BstF5I GGATG 3 cut(s) 268, 288, 297
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 2 cut(s) 382, 522
BstMAI GTCTC 2 cut(s) 261, 454
BstMBI GATC 2 cut(s) 379, 519
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 3 cut(s) 219, 222, 511
Bsu15I ATCGAT 1 cut(s) 452
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 409, 566
BsuTUI ATCGAT 1 cut(s) 452
BtgI CCRYGG 2 cut(s) 93, 301
BtgZI GCGATG 1 cut(s) 491
BtsCI GGATG 3 cut(s) 268, 288, 297
Cfr13I GGNCC 1 cut(s) 408
ClaI ATCGAT 1 cut(s) 452
CseI GACGC 2 cut(s) 39, 505
Csp6I GTAC 3 cut(s) 370, 433, 611
CviAII CATG 5 cut(s) 11, 32, 94, 302, 533
CviJI RGCY 6 cut(s) 409, 424, 442, 502, 543, 566
CviKI_1 RGCY 6 cut(s) 409, 424, 442, 502, 543, 566
CviQI GTAC 3 cut(s) 370, 433, 611
DdeI CTNAG 4 cut(s) 61, 254, 315, 490
DpnI GATC 2 cut(s) 381, 521
DpnII GATC 2 cut(s) 379, 519
EaeI YGGCCR 1 cut(s) 564
Eco130I CCWWGG 2 cut(s) 93, 301
EcoT14I CCWWGG 2 cut(s) 93, 301
ErhI CCWWGG 2 cut(s) 93, 301
FaeI CATG 5 cut(s) 14, 35, 97, 305, 536
FaqI GGGAC 2 cut(s) 432, 508
FatI CATG 5 cut(s) 10, 31, 93, 301, 532
Fnu4HI GCNGC 4 cut(s) 233, 236, 407, 500
FokI GGATG 3 cut(s) 275, 284, 295
Fsp4HI GCNGC 4 cut(s) 233, 236, 407, 500
FspBI CTAG 6 cut(s) 137, 152, 209, 348, 588, 646
GluI GCNGC 4 cut(s) 233, 236, 407, 500
HaeIII GGCC 2 cut(s) 409, 566
HgaI GACGC 2 cut(s) 39, 505
Hin1II CATG 5 cut(s) 14, 35, 97, 305, 536
HinfI GANTC 4 cut(s) 7, 28, 108, 526
Hpy166II GTNNAC 1 cut(s) 584
Hpy188I TCNGA 2 cut(s) 113, 560
Hpy188III TCNNGA 5 cut(s) 25, 152, 260, 332, 523
Hpy8I GTNNAC 1 cut(s) 584
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 432, 596
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
HpyF3I CTNAG 4 cut(s) 61, 254, 315, 490
Hsp92II CATG 5 cut(s) 14, 35, 97, 305, 536
Kzo9I GATC 2 cut(s) 379, 519
LpnPI CCDG 5 cut(s) 10, 245, 256, 345, 477
Lsp1109I GCAGC 3 cut(s) 219, 222, 511
LweI GCATC 1 cut(s) 468
MaeI CTAG 6 cut(s) 137, 152, 209, 348, 588, 646
MaeIII GTNAC 1 cut(s) 590
MalI GATC 2 cut(s) 381, 521
MboI GATC 2 cut(s) 379, 519
MfeI CAATTG 1 cut(s) 383
MluCI AATT 5 cut(s) 81, 167, 221, 383, 625
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 5 cut(s) 205, 208, 273, 466, 507
MseI TTAA 2 cut(s) 185, 363
MunI CAATTG 1 cut(s) 383
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 629
NcoI CCATGG 2 cut(s) 93, 301
NdeII GATC 2 cut(s) 379, 519
NlaIII CATG 5 cut(s) 14, 35, 97, 305, 536
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 592
PfeI GAWTC 4 cut(s) 7, 28, 108, 526
PkrI GCNGC 4 cut(s) 234, 237, 408, 501
PsiI TTATAA 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 408
RsaI GTAC 3 cut(s) 371, 434, 612
RsaNI GTAC 3 cut(s) 370, 433, 611
SaqAI TTAA 2 cut(s) 185, 363
SatI GCNGC 4 cut(s) 233, 236, 407, 500
Sau3AI GATC 2 cut(s) 379, 519
Sau96I GGNCC 1 cut(s) 408
SetI ASST 4 cut(s) 275, 518, 589, 647
SfaNI GCATC 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 5 cut(s) 81, 167, 221, 383, 625
SsiI CCGC 1 cut(s) 406
SspMI CTAG 6 cut(s) 137, 152, 209, 348, 588, 646
StyI CCWWGG 2 cut(s) 93, 301
TaaI ACNGT 2 cut(s) 432, 596
TaqI TCGA 4 cut(s) 213, 452, 518, 524
TasI AATT 5 cut(s) 81, 167, 221, 383, 625
TatI WGTACW 2 cut(s) 432, 610
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 4 cut(s) 7, 28, 108, 526
Tru1I TTAA 2 cut(s) 185, 363
Tru9I TTAA 2 cut(s) 185, 363
TseI GCWGC 3 cut(s) 232, 235, 499
TspDTI ATGAA 2 cut(s) 495, 542
XapI RAATTY 2 cut(s) 167, 625
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 6 cut(s) 137, 152, 209, 348, 588, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.