Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010027

Physical Location & Seq

Genomic Coordinates Reverse (-)

4695878 .. 4696557

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGCATGAAGTTTGTGGAGCTTTTGGATCAGGGAGTCAGAGTGGCCGCCAGGTTTCACTCTAATTGCCCCCAGACCAGTCGCAAGTACTACCATCCTCCGGCGCCCCACCACCATGACGACAACCACCACCACGACAACAACAACAACACCCACCACGCTTTAGCCGGCGGCGACCCTACGGCGACGGCGACGGCGACGGCGGGGATGCATTTTAAGAATGCTGAGAGCAGCAATGAGTTTATTCTTTTCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.56

Weight (kDa)

6.57

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57450
malus_domestica	MD02G1307300.v1.1
prunus_persica	Prupe.2G019800_v2.0.a1 Prupe.7G061500_v2.0.a1 Prupe.8G033700_v2.0.a1
pyrus_communis	pycom02g25850 pycom07g01410 pycom12g06330 pycom14g06130
rosa_chinensis	RchiOBHm_Chr1g0317121 RchiOBHm_Chr3g0482161 RchiOBHm_Chr3g0482181
rosa_laevigata	RLG00000030625
rosa_roxburghii	Rroxscaffold_4G00330640 Rroxscaffold_6G00399540 Rroxscaffold_6G00399670 Rroxscaffold_6G00400020
rosa_rugosa	Rorug01G0014900 Rorug03G0195500
rosa_wichuraiana	Rw1G001800 Rw3G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	3 cut(s)	48, 171, 203
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	4 cut(s)	198, 204, 210, 216
BciT130I	CCWGG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	3 cut(s)	48, 172, 232
BlsI	GCNGC	3 cut(s)	49, 173, 233
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	94, 213
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	101, 168
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	48, 171, 203
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	167
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	94, 213
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	94, 213
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	7, 116
CviJI	RGCY	3 cut(s)	22, 47, 167
CviKI_1	RGCY	3 cut(s)	22, 47, 167
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	225
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	2 cut(s)	10, 119
FaiI	YATR	2 cut(s)	8, 117
FatI	CATG	2 cut(s)	6, 115
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	48, 172, 232
FokI	GGATG	2 cut(s)	81, 220
Fsp4HI	GCNGC	3 cut(s)	48, 172, 232
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	3 cut(s)	48, 172, 232
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	101, 168
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	10, 119
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	101, 168
Hpy188I	TCNGA	1 cut(s)	41
Hpy99I	CGWCG	3 cut(s)	190, 196, 202
HpyCH4V	TGCA	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	10, 119
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	17, 37, 64, 86, 91, 114, 181
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	198
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MluCI	AATT	1 cut(s)	64
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	2 cut(s)	101, 168
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	52
NaeI	GCCGGC	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	1 cut(s)	28
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	10, 119
NlaIV	GGNNCC	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 194
PctI	GAATGC	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	49, 173, 233
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	48, 172, 232
Sau3AI	GATC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	2 cut(s)	24, 56
SfaNI	GCATC	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	3 cut(s)	48, 171, 203
SspDI	GGCGCC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	50
TasI	AATT	1 cut(s)	64
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	2 cut(s)	50, 174
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.