RchiOBHm_Chr1g0318291

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015679
Physical Location & Seq
Reverse (-)
5765578 .. 5766794
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGGTTCTCTTGTTACAAAAGATTGACAAACTCTACTCAAAGCTGGAGAATTACCACCACCACCACCACAATCACAACCATCAATCACAAGCCTTATCATCTTCTCTGGAGGCTTTTGAAACCCTTGTTTCCAATTCCTTTAACAAATTGTTTTCGAGCTCGAAATCAGCAGGATCTGAAGTTCCATCATTTCCATGGATCCAGCAGTGTTTTGAGCTCATACCCATCATCAACAATGGTTTTGCAAAGCTAGTTGTGGCCATAGACTATCCCATGACTAAATGGGAAGCTGATTCTGTGGAAGAGTATCTCAAATACACCTTGAATTTGCTAGAGTTGTGCAACTCCATCACTTGCTCTCTTTCTCATCTTGGGAAAGAGAGGCTTTCACTGTCTCATGGTTTGAATCTTGTGGAGAGTTCATCACCTTCTTTGGCTGTGGAGCATCTGAGACAAATTCAAGTCCAACCAAAGAGTTTGAGCAAGGATTTCAGATTCCAAGGAAATGAAGAACATGGGAAAGAAAGGTTTCCTATTACCAAGAAATCAGTTATTCATCAAGCTTTGGTGGTTATGGAGGGGATGGTGTTTTGGGTATGTGGGATTTTGATGACTGTTTTGGATGGGGATTCCAAGCCATACTTGGAGATGAGAAAATCTGGTGGAAGGTTAGTAAGTTCATTGATTTCTGGGTTGGATTTGAGTGTGGGTGAAGTAATTGTGGAGAGAAGAGGCATGTTGAAAGAGGTGAAAGAGATTAATGACTCGGTTGCAGCCCTTGTTTCTGCTATTGGGATTGGGAAAAGGAGTAAAGCAGAAGCTGAGGAATTACAAAGAAGATTAGAGGTGTTTGAGAAGATGGTGGAGGGTTTGGGAAAAGAGGTGGATTGTCTTTTCAATAAGGTTTTGGCTGGAAGAAATCAACTGCTCAATGGATTTCAACACCAAAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1 DUF241

Protein Analysis

318

Amino Acids

35.77

Weight (kDa)

6.93

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 97 - 311 2.3e-08 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g01730
malus_domestica MD02G1301300.v1.1 MD07G1022600.v1.1 MD07G1022700.v1.1
prunus_persica Prupe.2G023200_v2.0.a1
pyrus_communis pycom02g25310 pycom07g01710 pycom07g01720
rosa_chinensis RchiOBHm_Chr1g0318291
rosa_laevigata RLG00000030548
rosa_multiflora Rmu_ssc0000308.1_g000005
rosa_roxburghii Rroxscaffold_4G00329450
rosa_rugosa Rorug01G0019900
rosa_samantha Rh1AG032100 Rh1BG027600 Rh1DG039400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 181, 193, 206
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 325, 456
AcuI CTGAAG 1 cut(s) 198
AgsI TTSAA 7 cut(s) 119, 325, 406, 461, 742, 898, 941
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 7 cut(s) 43, 159, 217, 250, 290, 563, 821
AluI AGCT 7 cut(s) 43, 159, 217, 250, 290, 563, 821
Alw21I GWGCWC 2 cut(s) 161, 219
Alw26I GTCTC 2 cut(s) 399, 445
AlwI GGATC 3 cut(s) 181, 193, 206
AlwNI CAGNNNCTG 2 cut(s) 176, 821
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 2 cut(s) 325, 456
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 528
AsuHPI GGTGA 3 cut(s) 417, 722, 760
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 198
BanII GRGCYC 2 cut(s) 161, 219
Bbv12I GWGCWC 2 cut(s) 161, 219
BbvCI CCTCAGC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 785
BccI CCATC 7 cut(s) 87, 193, 233, 356, 577, 617, 853
BcoDI GTCTC 2 cut(s) 399, 445
BfaI CTAG 2 cut(s) 251, 332
BisI GCNGC 1 cut(s) 774
BlsI GCNGC 1 cut(s) 775
BmiI GGNNCC 1 cut(s) 200
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 2 cut(s) 65, 128
Bpu10I CCTNAGC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 194, 499
BseDI CCNNGG 2 cut(s) 194, 499
BseGI GGATG 2 cut(s) 588, 628
BseMII CTCAG 2 cut(s) 440, 813
BseXI GCAGC 1 cut(s) 785
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 2 cut(s) 161, 219
BsmAI GTCTC 2 cut(s) 399, 445
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 161, 219
Bsp143I GATC 2 cut(s) 173, 198
Bsp19I CCATGG 1 cut(s) 194
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 441, 814
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 3 cut(s) 181, 193, 206
BssECI CCNNGG 2 cut(s) 194, 499
BssMI GATC 2 cut(s) 173, 198
BssT1I CCWWGG 2 cut(s) 194, 499
Bst4CI ACNGT 2 cut(s) 393, 616
Bst6I CTCTTC 2 cut(s) 297, 724
BstDEI CTNAG 2 cut(s) 449, 822
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 588, 628
BstKTI GATC 2 cut(s) 176, 201
BstMAI GTCTC 2 cut(s) 399, 445
BstMBI GATC 2 cut(s) 173, 198
BstNSI RCATGY 1 cut(s) 739
BstV1I GCAGC 1 cut(s) 785
BstX2I RGATCY 2 cut(s) 173, 198
BstYI RGATCY 2 cut(s) 173, 198
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 588, 628
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 2 cut(s) 212, 389
CaiI CAGNNNCTG 2 cut(s) 176, 821
CviAII CATG 5 cut(s) 195, 274, 398, 515, 736
DdeI CTNAG 2 cut(s) 449, 822
DpnI GATC 2 cut(s) 175, 200
DpnII GATC 2 cut(s) 173, 198
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 297, 724
EarI CTCTTC 2 cut(s) 297, 724
Ecl136II GAGCTC 2 cut(s) 159, 217
Eco130I CCWWGG 2 cut(s) 194, 499
Eco24I GRGCYC 2 cut(s) 161, 219
Eco53kI GAGCTC 2 cut(s) 159, 217
Eco57I CTGAAG 1 cut(s) 198
EcoICRI GAGCTC 2 cut(s) 159, 217
EcoT14I CCWWGG 2 cut(s) 194, 499
EcoT38I GRGCYC 2 cut(s) 161, 219
ErhI CCWWGG 2 cut(s) 194, 499
FaeI CATG 5 cut(s) 198, 277, 401, 518, 739
FalI AAGNNNNNCTT 4 cut(s) 369, 401, 626, 658
FatI CATG 5 cut(s) 194, 273, 397, 514, 735
Fnu4HI GCNGC 1 cut(s) 774
FokI GGATG 2 cut(s) 595, 635
FriOI GRGCYC 2 cut(s) 161, 219
Fsp4HI GCNGC 1 cut(s) 774
FspBI CTAG 2 cut(s) 251, 332
GluI GCNGC 1 cut(s) 774
GsuI CTGGAG 2 cut(s) 65, 128
HaeIII GGCC 1 cut(s) 260
Hin1II CATG 5 cut(s) 198, 277, 401, 518, 739
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 5 cut(s) 293, 406, 495, 629, 764
HphI GGTGA 3 cut(s) 417, 722, 760
Hpy188I TCNGA 3 cut(s) 178, 450, 494
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 438, 660
HpyCH4III ACNGT 2 cut(s) 393, 616
HpyCH4V TGCA 3 cut(s) 245, 342, 773
HpyF3I CTNAG 2 cut(s) 449, 822
Hsp92II CATG 5 cut(s) 198, 277, 401, 518, 739
Kzo9I GATC 2 cut(s) 173, 198
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 7 cut(s) 29, 92, 156, 215, 645, 675, 897
Lsp1109I GCAGC 1 cut(s) 785
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 251, 332
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 175, 200
MboI GATC 2 cut(s) 173, 198
MboII GAAGA 7 cut(s) 93, 314, 521, 741, 849, 868, 927
MflI RGATCY 2 cut(s) 173, 198
MhlI GDGCHC 2 cut(s) 161, 219
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 7 cut(s) 49, 133, 146, 325, 456, 717, 827
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 2 cut(s) 490, 675
MnlI CCTC 9 cut(s) 103, 375, 571, 725, 739, 817, 838, 859, 874
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 528
MscI TGGCCA 1 cut(s) 260
MseI TTAA 2 cut(s) 141, 759
MslI CAYNNNNRTG 1 cut(s) 193
Msp20I TGGCCA 1 cut(s) 260
NcoI CCATGG 1 cut(s) 194
NdeII GATC 2 cut(s) 173, 198
NlaIII CATG 5 cut(s) 198, 277, 401, 518, 739
NlaIV GGNNCC 1 cut(s) 200
NspI RCATGY 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 528
PfeI GAWTC 4 cut(s) 293, 406, 495, 629
PkrI GCNGC 1 cut(s) 775
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
PshBI ATTAAT 1 cut(s) 759
Psp124BI GAGCTC 2 cut(s) 161, 219
PspN4I GGNNCC 1 cut(s) 200
PstNI CAGNNNCTG 2 cut(s) 176, 821
PsuI RGATCY 2 cut(s) 173, 198
RseI CAYNNNNRTG 1 cut(s) 193
SacI GAGCTC 2 cut(s) 161, 219
SaqAI TTAA 2 cut(s) 141, 759
SatI GCNGC 1 cut(s) 774
Sau3AI GATC 2 cut(s) 173, 198
SchI GAGTC 1 cut(s) 758
SduI GDGCHC 2 cut(s) 161, 219
SfaNI GCATC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 193
Sse9I AATT 7 cut(s) 49, 133, 146, 325, 456, 717, 827
SspMI CTAG 2 cut(s) 251, 332
SstI GAGCTC 2 cut(s) 161, 219
StyI CCWWGG 2 cut(s) 194, 499
TaaI ACNGT 2 cut(s) 393, 616
TaqI TCGA 2 cut(s) 155, 161
TasI AATT 7 cut(s) 49, 133, 146, 325, 456, 717, 827
TfiI GAWTC 4 cut(s) 293, 406, 495, 629
Tru1I TTAA 2 cut(s) 141, 759
Tru9I TTAA 2 cut(s) 141, 759
TscAI CASTG 2 cut(s) 212, 396
TseI GCWGC 1 cut(s) 773
TspDTI ATGAA 4 cut(s) 411, 522, 545, 669
TspRI CASTG 2 cut(s) 212, 396
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 325, 456
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 2 cut(s) 192, 640
XmnI GAANNNNTTC 1 cut(s) 528
XspI CTAG 2 cut(s) 251, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.