RchiOBHm_Chr1g0326801

NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 8

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
15345190 .. 15345444
255 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 255 bp
ATGGCAGGAAGATTGAGCAACGTGGCTCAGACCTCCTTTCTTCGGCTTCGCACCAGCATGAGCCTCCTCGTCAGCAAACACATTGTCCCTGAAATACCTCTCCCAGTCAACGACAAGCTCGTCTGGGACAGCAGCCCGCTGTTTCCCAAACCCTTTATCGAACGCATCGCCAACATTGTCGGAAAGTACGAAGCTTTAGCTTGGCTAACTGGAGGTCTGAGCTGCTTCGTTGGGCTGGGCTTGTTGGTCATGTGA

Protein Analysis

84

Amino Acids

9.22

Weight (kDa)

9.51

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AciI CCGC 1 cut(s) 137
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 42
AluBI AGCT 4 cut(s) 118, 194, 200, 222
AluI AGCT 4 cut(s) 118, 194, 200, 222
ApeKI GCWGC 2 cut(s) 132, 222
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
BbvI GCAGC 2 cut(s) 144, 209
BisI GCNGC 2 cut(s) 133, 223
BlsI GCNGC 2 cut(s) 134, 224
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 104, 214
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 41, 209
BseNI ACTGG 2 cut(s) 104, 214
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 144, 209
BseYI CCCAGC 1 cut(s) 235
BslFI GGGAC 2 cut(s) 71, 140
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 71, 140
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 40, 210
BsrI ACTGG 2 cut(s) 104, 214
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 27, 218
BstV1I GCAGC 2 cut(s) 144, 209
BtgZI GCGATG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 58, 250
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 27, 218
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
FaeI CATG 2 cut(s) 61, 253
FaiI YATR 2 cut(s) 59, 251
FaqI GGGAC 2 cut(s) 71, 140
FatI CATG 2 cut(s) 57, 249
FauI CCCGC 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 133, 223
Fsp4HI GCNGC 2 cut(s) 133, 223
GluI GCNGC 2 cut(s) 133, 223
GsaI CCCAGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 231
Hin1II CATG 2 cut(s) 61, 253
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 30, 182, 219
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 21
HpyF3I CTNAG 2 cut(s) 27, 218
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 2 cut(s) 61, 253
LpnPI CCDG 6 cut(s) 67, 102, 109, 117, 195, 221
Lsp1109I GCAGC 2 cut(s) 144, 209
LweI GCATC 1 cut(s) 174
MaeII ACGT 1 cut(s) 21
MboII GAAGA 2 cut(s) 21, 32
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 5 cut(s) 43, 74, 77, 108, 206
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 139
NlaIII CATG 2 cut(s) 61, 253
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 186
PkrI GCNGC 2 cut(s) 134, 224
PspFI CCCAGC 1 cut(s) 235
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 56
SatI GCNGC 2 cut(s) 133, 223
SetI ASST 8 cut(s) 24, 35, 100, 120, 196, 202, 217, 224
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 56
SsiI CCGC 1 cut(s) 137
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 159
TseI GCWGC 2 cut(s) 132, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.