Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003584

Physical Location & Seq

Genomic Coordinates Reverse (-)

16503886 .. 16528444

Gene Structure 24559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3486 bp

ATGGGCGTACCGCAAGACTCCTTGGCGGACCCTCCTAAGAGCAGCAAGAACCAACGGTTTCGTAATGGCAAGCAAGTTCATCACATGGACATTGATAAGGAACTCCTCGCCGCCCCAATCAAATCCGCCAAGGACAAATTCGCACTCATTCCCGAGTTTCTAAAGGTGAGAGGGTTGGTAAAGCAGCATTTGGACTCGTTTAATTACTTTGTCAACACTGGAATCAAGAAAATTGTGCGTGCCAATGATCGCATAGTGTCCGGCGTCGATCCAAGCATTTGGCTCAGGTTTAATAATATCTATATTGATAAGCCCTCACTGACAACTGATGGTGTCACTACCGAAATCGCTCCCCATACATGTCGTTTATCTGATATGACGTATTCTGCTCCAATAAGAGTCGATGTAGAGTACGTTGAAGGAAGTCACGATCAAAAGAGGATAGTGACCAGGAAAGCTGTCGAAATTGCAAGAATGCCTATTATGTTACGGAGTTGCTGCTGTACCTTATATGGAAAAACGGAATCCGAACTTGCAATTCTTGGTGAGTGCCCACTTGATCCTGGAGGGTATTTTATCATCAAAGGGAATGAGAAGGTGCTTTTGATACAAGAACAGCTTTCAAAAAACAGGATTATCATTGACATGGATAAGAAGGGAAACGTAAATGCTTCTGTTACAAGCAGTTCAGAGACAATTAAAAGCAAGACTGTAATTCAGATGGAAAAACAGAAGATCTATTTGGATCTTAATCAATTTTCCAAAAAGATTCCAATTATGGTGGTCATGAAGGCTATGGGAATGACTAGTGATCAAGAAGTTGTACAGATGGTTGGAAGAGATCCTCGATATGGTGCCCTGCTCATGCCATCTATTGAGGAATGCGCAAAGGAAGGTATATATACAAAAGAGCAAGCACTGCTGTATCTCGAATCAAAGGTGAAGAGGTCCATGTTTGATCGTCCTTCATCTGATAATGACTGTAAAGTAACGGCAGTTCTTCGAGATATATTTATTGCTAATGTTCCGGTATGCCGGTCCAATTTTCGTCCAAAATGCATATATGTTGCTGTCATGTTGAGGCGCATAATGGATGCAATTTTAAACAAGGATGCGATGGATGACAAGGATTATGTTGGGAACAAGCGGCTTGAGCTATCTGGGCAATCTATTTCTCTTCTGTTTGAGGATCTGTTCAAGACAATGATCTCTGAAGTTAGGAAGACTGTAGACAATATATTAACAAAGCCTAGCAGGTCTAGTCGTTTTGACTTGGCTCAGTACATACGCAAAGATAGTATTTCACATGGCCTTGAAAGAACCCTTTCTACTGGAAACTTTGATCTCAAACGGTTCAGGATGCACAGGACAGGCATGACACAGGTGCTAGCTAGGTTATCTTTCATTGGGTCTCTAGGCCAAATGACCAGAACAAAACCGCAGTTTGAGAAGTCACGAAAAGTGAGTGGACCTAGAGCCTTGCAACCTAGCCAGTGGGGCATGCTTTGCCCTTGTGACACTCCAGAAGGTGAAGCATGTGGACTGGTAAAAAATTTGGCCCTGATGGCCCATGTAACAACCGATGAAGAGGAGGGCCCTCTAATATCTCTGTGCAAATGCTTGGGTGTGGAAGATTTGGAAACACTATCGGCAGAGGAGCTTCACTCACCCAATTCTTTTCTGGTTTTATTCAATGGAGACATCCTCGGAAAGCACAGGAAGCCACAGCGTTTTGCCACTGCAATGAGAAAGTTGCGTAGAGCTGGGAAGATTGGAGAATTTGTTAGCGTCTTTGTCAATGAGAAGCAGCATTGTGTTTACATTGCTTCTGATGGCGGTCGAGTTTGTCGGCCACTAGTTATCGCTGACAGGGGCATTTCAAGAGTCAAAGAATATCACATGCAGGAGCTGAATGCTGGAGTCCGTACTTTTAATGACTTTTTAAGTGATGGGTTGATCGAGTATCTTGATGTTAACGAGCAGAATAATGCTTTGATTGCTCTATACGAAGATGAGGCAACAACAGAAACTACTCATATAGAAATAGAGCCTTTCACCATCTTAGGTGTTATTGCTGGGCTAATTCCGTATCCTCACCACAATCAGTCGCCTAGAAATACTTACCAGTGTGCAATGGGGAAGCAAGCAATGGGGAATATCGCATATAACCAGCTTCGTCGGATAGACTTGCTTTACCTTCTGGTGTATCCCCAACGACCATTATTGACAACAAAGACCATTGAGCTGGTGGGCTTTGATAAACTCGGAGCTGGGCAGAATGCAACTGTTGCTGTGATGAGTTATAGTGGCTATGACATAGAGGATGCAATCGTCATGAACAAGGCATCTCTGGATCGTGGTTTTGGTCGTTGTATTCTTATGAAAAAGTTTGTTGTCGCCAATCAAAATTATAACAATAACACACAAGACAGAATAATCAGGCCAAGTAAAGATGAAGTTGATTCTGGAAAGATGCAGGTTCTCGATGATGATGGTATTGCTGCACCTGGGGAAATTATTAGATCAAATGACATCTATGTAAAGAAGCAGGTCCCTATTGTCACAAGGGGGGCTATTAGATCGGGATTAAAGGATAGTGAGTATCGGTCTGCCTTTCAAAAATATAAAGGACCTGATGGGGAGTCTTGTGTGGTGGATAAAGTAGCTCTCTTTTCTGATACACATAATAATTTATGTGTTAAAGTATTGATTCGCCATACTCGTAGACCAGAGGTTGGTGACAAGTTTAGTAGCAGACATGGGCAGAAAGGTGTTTGTGGTACAATTGTCCAGCAGGAAGATTTCCCATTTTCTGAACGTGGCATTTGCCCTGATTTAATCATGAACCCTCATGGATTTCCAAGCCGAATGACTGTTGGCAAGATGATTGAGCTTCTTGGGGGTAAAGCAGGAGTTTCATGTGGTAAGTTTCATTATGGTAGTGCCTTTGGTGAACCAAGTGGTCATGCAGACAAGGTTGAGGCTATAAGTGAAACACTTGTGAGGATGGGATTTAGCTATGATGGCAAAGACTTCTTATGCTCAGGAATCACTGGTTGCCCATTGCAAGCATATATTTTCATGGGACCAATTTACTACCAGAAGTTAAAACACATGGTCCTTGATAAAATGCATGCACGTGGTAGTGGTCCCAGAGTCAGTCTAACTAGACAGCCTACTGAGGGAAAAGCTCGTAATGGAGGACTACGAGTAGGAGAAATGGAGCGTGATTGTCTGATTGCTTATGGTGCCAGTATGTTGCTGTATGAGCGCCTAATGATCTCTAGTGATCCTTTCGAAGTTCAGGTTTGCAGAGTGTGTGGTTTATTGGGTTATTACAACCACAAGATGAAAGCGGGAATTTGTTCCTCATGCAAAAATGGGGATAATATTTCTACCATGAAGCTTCCCTATGCTTGCAAGCTCTTGATCCAGGAACTCCAGTCGATGAACATTGTTCCCCGCTTAAAACTAGCTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006383 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032501 GO:0032502 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0046483 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080134 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1161

Amino Acids

129.91

Weight (kDa)

8.91

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	58 - 435	1.7e-53	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	209 - 385	4.5e-22	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	461 - 525	6e-19	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4	PF04566	562 - 622	2.4e-23	RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6	PF00562	691 - 1065	4.1e-135	RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7	PF04560	1067 - 1157	7.4e-31	RNA polymerase Rpb2, domain 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45140 AT5G45140 AT5G45140
fragaria_vesca	FvH4_5g31720 FvH4_7g03930
malus_domestica	MD14G1029000.v1.1
prunus_persica	Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1 Prupe.2G044100_v2.0.a1
pyrus_communis	pycom14g02710
rosa_chinensis	RchiOBHm_Chr1g0327591 RchiOBHm_Chr7g0227611
rosa_laevigata	RLG00000001632 RLG00000029981
rosa_multiflora	Rmu_co8491793.1_g000001 Rmu_sc0001772.1_g000005 Rmu_ssc0000042.1_g000027
rosa_roxburghii	Rroxscaffold_3G00232000 Rroxscaffold_4G00322550
rosa_rugosa	Rorug01G0068500 Rorug07G0242400
rosa_samantha	Rh1AG085800 Rh1BG068400 Rh1CG083300 Rh1DG090000 Rh7AG395800 Rh7BG377500 Rh7CG414500 Rh7DG391600
rosa_wichuraiana	Rw1G006690 Rw7G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2412
Acc16I	TGCGCA	1 cut(s)	886
Acc36I	ACCTGC	3 cut(s)	1245, 2467, 2539
AccB1I	GGYRCC	2 cut(s)	854, 3248
AccB7I	CCANNNNNTGG	1 cut(s)	2735
AccI	GTMKAC	2 cut(s)	1230, 2725
AciI	CCGC	9 cut(s)	11, 26, 111, 126, 1147, 1439, 1836, 3356, 3463
AclWI	GGATC	8 cut(s)	263, 554, 753, 836, 1197, 2361, 3284, 3424
AcoI	YGGCCR	1 cut(s)	1850
AcsI	RAATTY	4 cut(s)	137, 1552, 1778, 3360
AcuI	CTGAAG	1 cut(s)	1233
AcvI	CACGTG	1 cut(s)	3140
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	7 cut(s)	9, 413, 505, 825, 1283, 1927, 2782
AfiI	CCNNNNNNNGG	3 cut(s)	851, 2735, 3182
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	419, 624, 1198, 1316, 1693, 1881, 2618
AhlI	ACTAGT	2 cut(s)	806, 1855
AjnI	CCWGG	4 cut(s)	449, 562, 2506, 3432
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 725, 757
Alw26I	GTCTC	3 cut(s)	686, 1416, 1692
AlwI	GGATC	8 cut(s)	263, 554, 753, 836, 1197, 2361, 3284, 3424
AlwNI	CAGNNNCTG	1 cut(s)	1909
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	7 cut(s)	1309, 1417, 1557, 1566, 1594, 1850, 2441
ApaI	GGGCCC	1 cut(s)	1598
ApeKI	GCWGC	5 cut(s)	42, 184, 498, 1807, 2501
ApoI	RAATTY	4 cut(s)	137, 1552, 1778, 3360
Asp700I	GAANNNNTTC	2 cut(s)	1324, 3364
AspLEI	GCGC	3 cut(s)	887, 1086, 3273
AsuHPI	GGTGA	9 cut(s)	178, 557, 952, 1541, 1659, 2047, 2087, 2750, 2963
AsuII	TTCGAA	1 cut(s)	3297
AsuNHI	GCTAGC	1 cut(s)	1387
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	9 cut(s)	28, 948, 1038, 1469, 2551, 2630, 3086, 3118, 3149
BaeGI	GKGCMC	3 cut(s)	554, 859, 1598
BaeI	ACNNNNGTAYC	4 cut(s)	908, 941, 2772, 2805
BanI	GGYRCC	2 cut(s)	854, 3248
BanII	GRGCYC	1 cut(s)	1598
BbrPI	CACGTG	1 cut(s)	3140
BbsI	GAAGAC	1 cut(s)	1229
BbvI	GCAGC	5 cut(s)	54, 196, 485, 1819, 2488
BceAI	ACGGC	1 cut(s)	1008
BciT130I	CCWGG	4 cut(s)	451, 564, 2508, 3434
BciVI	GTATCC	2 cut(s)	2100, 2217
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	686, 1416, 1692
BcuI	ACTAGT	2 cut(s)	806, 1855
BfmI	CTRYAG	1 cut(s)	1227
BfoI	RGCGCY	1 cut(s)	3274
BfuAI	ACCTGC	3 cut(s)	1245, 2467, 2539
BfuI	GTATCC	2 cut(s)	2100, 2217
BglI	GCCNNNNNGGC	2 cut(s)	1497, 1565
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2502
BlsI	GCNGC	7 cut(s)	44, 112, 186, 500, 1149, 1809, 2503
Bme1390I	CCNGG	4 cut(s)	451, 564, 2508, 3434
Bme18I	GGWCC	9 cut(s)	28, 948, 1038, 1469, 2551, 2630, 3086, 3118, 3149
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	7 cut(s)	30, 856, 1596, 2553, 3087, 3151, 3250
BmrFI	CCNGG	4 cut(s)	451, 564, 2508, 3434
BmsI	GCATC	6 cut(s)	1084, 1102, 1350, 2314, 2354, 2463
BmtI	GCTAGC	1 cut(s)	1391
BpiI	GAAGAC	1 cut(s)	1229
BplI	GAGNNNNNCTC	4 cut(s)	1649, 1681, 1689, 1721
BpmI	CTGGAG	4 cut(s)	585, 1506, 1938, 3425
Bpu10I	CCTNAGC	2 cut(s)	284, 3043
Bpu14I	TTCGAA	1 cut(s)	3297
BpuEI	CTTGAG	1 cut(s)	1172
BsaAI	YACGTR	1 cut(s)	3140
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	1416
BsaJI	CCNNGG	4 cut(s)	21, 129, 1705, 2507
BsaWI	WCCGGW	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	2 cut(s)	1767, 1797
Bsc4I	CCNNNNNNNGG	3 cut(s)	851, 2735, 3182
Bse118I	RCCGGY	1 cut(s)	1035
Bse1I	ACTGG	8 cut(s)	223, 1336, 1492, 1548, 2125, 3058, 3252, 3442
Bse3DI	GCAATG	5 cut(s)	1749, 1821, 2139, 2154, 3062
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	4 cut(s)	451, 564, 2508, 3434
BseDI	CCNNGG	4 cut(s)	21, 129, 1705, 2507
BseGI	GGATG	7 cut(s)	1099, 1117, 1126, 1365, 1701, 2329, 3012
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	851, 2735, 3182
BseMI	GCAATG	5 cut(s)	1749, 1821, 2139, 2154, 3062
BseMII	CTCAG	4 cut(s)	298, 1292, 3057, 3171
BseNI	ACTGG	8 cut(s)	223, 1336, 1492, 1548, 2125, 3058, 3252, 3442
BseRI	GAGGAG	3 cut(s)	95, 1604, 1670
BseSI	GKGCMC	3 cut(s)	554, 859, 1598
BseXI	GCAGC	5 cut(s)	54, 196, 485, 1819, 2488
BseYI	CCCAGC	3 cut(s)	1763, 2075, 2270
BsgI	GTGCAG	1 cut(s)	2487
Bsh1285I	CGRYCG	1 cut(s)	1840
BshFI	GGCC	7 cut(s)	1311, 1419, 1559, 1568, 1596, 1852, 2443
BshNI	GGYRCC	2 cut(s)	854, 3248
BsiEI	CGRYCG	1 cut(s)	1840
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	261, 1028, 1036
BslFI	GGGAC	3 cut(s)	2537, 3099, 3135
BslI	CCNNNNNNNGG	3 cut(s)	851, 2735, 3182
BsmAI	GTCTC	3 cut(s)	686, 1416, 1692
BsmFI	GGGAC	3 cut(s)	2537, 3099, 3135
BsmI	GAATGC	4 cut(s)	480, 887, 1918, 2284
BsnI	GGCC	7 cut(s)	1311, 1419, 1559, 1568, 1596, 1852, 2443
Bso31I	GGTCTC	1 cut(s)	1416
BsoBI	CYCGRG	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	3297
Bsp120I	GGGCCC	1 cut(s)	1594
Bsp1286I	GDGCHC	3 cut(s)	554, 859, 1598
Bsp1407I	TGTACA	1 cut(s)	823
BspACI	CCGC	9 cut(s)	11, 26, 111, 126, 1147, 1439, 1836, 3356, 3463
BspANI	GGCC	7 cut(s)	1311, 1419, 1559, 1568, 1596, 1852, 2443
BspCNI	CTCAG	4 cut(s)	297, 1291, 3056, 3172
BspHI	TCATGA	3 cut(s)	786, 2334, 2841
BspLI	GGNNCC	7 cut(s)	30, 856, 1596, 2553, 3087, 3151, 3250
BspMI	ACCTGC	3 cut(s)	1245, 2467, 2539
BspOI	GCTAGC	1 cut(s)	1391
BspPI	GGATC	8 cut(s)	263, 554, 753, 836, 1197, 2361, 3284, 3424
BspT104I	TTCGAA	1 cut(s)	3297
BspT107I	GGYRCC	2 cut(s)	854, 3248
BspTNI	GGTCTC	1 cut(s)	1416
BsrDI	GCAATG	5 cut(s)	1749, 1821, 2139, 2154, 3062
BsrFI	RCCGGY	1 cut(s)	1035
BsrGI	TGTACA	1 cut(s)	823
BsrI	ACTGG	8 cut(s)	223, 1336, 1492, 1548, 2125, 3058, 3252, 3442
BssAI	RCCGGY	1 cut(s)	1035
BssECI	CCNNGG	4 cut(s)	21, 129, 1705, 2507
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	21, 129
Bst2UI	CCWGG	4 cut(s)	451, 564, 2508, 3434
Bst4CI	ACNGT	7 cut(s)	57, 712, 983, 1228, 1353, 2287, 2875
Bst6I	CTCTTC	4 cut(s)	832, 938, 1182, 1581
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	3 cut(s)	919, 1506, 2288
BstAUI	TGTACA	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	3140
BstBI	TTCGAA	1 cut(s)	3297
BstDEI	CTNAG	6 cut(s)	36, 284, 1278, 2062, 3043, 3180
BstF5I	GGATG	7 cut(s)	1099, 1117, 1126, 1365, 1701, 2329, 3012
BstH2I	RGCGCY	1 cut(s)	3274
BstHHI	GCGC	3 cut(s)	887, 1086, 3273
BstMAI	GTCTC	3 cut(s)	686, 1416, 1692
BstMCI	CGRYCG	1 cut(s)	1840
BstNI	CCWGG	4 cut(s)	451, 564, 2508, 3434
BstNSI	RCATGY	5 cut(s)	363, 1504, 1539, 1903, 3137
BstSCI	CCNGG	4 cut(s)	449, 562, 2506, 3432
BstSFI	CTRYAG	1 cut(s)	1227
BstSLI	GKGCMC	3 cut(s)	554, 859, 1598
BstV1I	GCAGC	5 cut(s)	54, 196, 485, 1819, 2488
BstV2I	GAAGAC	1 cut(s)	1229
BstX2I	RGATCY	4 cut(s)	735, 745, 841, 1189
BstXI	CCANNNNNNTGG	2 cut(s)	279, 2245
BstYI	RGATCY	4 cut(s)	735, 745, 841, 1189
BsuI	GTATCC	2 cut(s)	2100, 2217
BsuRI	GGCC	7 cut(s)	1311, 1419, 1559, 1568, 1596, 1852, 2443
BtgZI	GCGATG	1 cut(s)	1130
BtsCI	GGATG	7 cut(s)	1099, 1117, 1126, 1365, 1701, 2329, 3012
BtsI	GCAGTG	2 cut(s)	917, 1737
BtsIMutI	CAGTG	7 cut(s)	216, 317, 917, 1499, 1737, 2132, 3051
BveI	ACCTGC	3 cut(s)	1245, 2467, 2539
CaiI	CAGNNNCTG	1 cut(s)	1909
CciI	TCATGA	3 cut(s)	786, 2334, 2841
CfoI	GCGC	3 cut(s)	887, 1086, 3273
Cfr10I	RCCGGY	1 cut(s)	1035
CseI	GACGC	2 cut(s)	253, 1777
Csp6I	GTAC	7 cut(s)	8, 412, 504, 824, 1282, 1926, 2781
CspCI	CAANNNNNGTGG	2 cut(s)	762, 797
CviQI	GTAC	7 cut(s)	8, 412, 504, 824, 1282, 1926, 2781
DdeI	CTNAG	6 cut(s)	36, 284, 1278, 2062, 3043, 3180
DraI	TTTAAA	1 cut(s)	1104
EaeI	YGGCCR	1 cut(s)	1850
Eam1104I	CTCTTC	4 cut(s)	832, 938, 1182, 1581
EarI	CTCTTC	4 cut(s)	832, 938, 1182, 1581
EciI	GGCGGA	2 cut(s)	41, 115
Eco130I	CCWWGG	2 cut(s)	21, 129
Eco24I	GRGCYC	1 cut(s)	1598
Eco31I	GGTCTC	1 cut(s)	1416
Eco47I	GGWCC	9 cut(s)	28, 948, 1038, 1469, 2551, 2630, 3086, 3118, 3149
Eco57I	CTGAAG	1 cut(s)	1233
Eco72I	CACGTG	1 cut(s)	3140
Eco88I	CYCGRG	1 cut(s)	152
EcoO109I	RGGNCCY	4 cut(s)	1594, 1595, 2551, 2630
EcoRII	CCWGG	4 cut(s)	449, 562, 2506, 3432
EcoT14I	CCWWGG	2 cut(s)	21, 129
EcoT22I	ATGCAT	2 cut(s)	1061, 3135
EcoT38I	GRGCYC	1 cut(s)	1598
ErhI	CCWWGG	2 cut(s)	21, 129
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	3 cut(s)	2537, 3099, 3135
FauI	CCCGC	2 cut(s)	3349, 3470
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	2 cut(s)	1230, 2725
Fnu4HI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2502
FokI	GGATG	7 cut(s)	1106, 1124, 1133, 1372, 1688, 2336, 3019
FriOI	GRGCYC	1 cut(s)	1598
Fsp4HI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2502
FspI	TGCGCA	1 cut(s)	886
GlaI	GCGC	3 cut(s)	886, 1085, 3272
GluI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2502
GsaI	CCCAGC	3 cut(s)	1767, 2079, 2274
GsuI	CTGGAG	4 cut(s)	585, 1506, 1938, 3425
HaeII	RGCGCY	1 cut(s)	3274
HaeIII	GGCC	7 cut(s)	1311, 1419, 1559, 1568, 1596, 1852, 2443
HapII	CCGG	3 cut(s)	261, 1028, 1036
HgaI	GACGC	2 cut(s)	253, 1777
HhaI	GCGC	3 cut(s)	887, 1086, 3273
Hin1I	GRCGYC	1 cut(s)	264
Hin6I	GCGC	3 cut(s)	885, 1084, 3271
HinP1I	GCGC	3 cut(s)	885, 1084, 3271
HincII	GTYRAC	2 cut(s)	214, 1975
HindII	GTYRAC	2 cut(s)	214, 1975
HindIII	AAGCTT	2 cut(s)	3404, 3480
HpaI	GTTAAC	1 cut(s)	1975
HpaII	CCGG	3 cut(s)	261, 1028, 1036
HphI	GGTGA	9 cut(s)	178, 557, 952, 1541, 1659, 2047, 2087, 2750, 2963
Hpy166II	GTNNAC	8 cut(s)	214, 1231, 1469, 1541, 1819, 1975, 2726, 2954
Hpy8I	GTNNAC	8 cut(s)	214, 1231, 1469, 1541, 1819, 1975, 2726, 2954
Hpy99I	CGWCG	2 cut(s)	269, 2181
HpyAV	CCTTC	8 cut(s)	413, 589, 649, 784, 887, 975, 1520, 2207
HpyCH4III	ACNGT	7 cut(s)	57, 712, 983, 1228, 1353, 2287, 2875
HpyCH4IV	ACGT	5 cut(s)	380, 414, 663, 2818, 3139
HpyF3I	CTNAG	6 cut(s)	36, 284, 1278, 2062, 3043, 3180
HpySE526I	ACGT	5 cut(s)	380, 414, 663, 2818, 3139
Hsp92I	GRCGYC	1 cut(s)	264
HspAI	GCGC	3 cut(s)	885, 1084, 3271
Ksp22I	TGATCA	1 cut(s)	811
KspAI	GTTAAC	1 cut(s)	1975
LmnI	GCTCC	6 cut(s)	355, 394, 1657, 1906, 2267, 3223
Lsp1109I	GCAGC	5 cut(s)	54, 196, 485, 1819, 2488
LweI	GCATC	6 cut(s)	1084, 1102, 1350, 2314, 2354, 2463
MaeII	ACGT	5 cut(s)	380, 414, 663, 2818, 3139
MfeI	CAATTG	1 cut(s)	2784
MflI	RGATCY	4 cut(s)	735, 745, 841, 1189
MhlI	GDGCHC	3 cut(s)	554, 859, 1598
MlyI	GAGTC	7 cut(s)	11, 188, 408, 1893, 1929, 2651, 3165
MmeI	TCCRAC	2 cut(s)	814, 2159
Mph1103I	ATGCAT	2 cut(s)	1061, 3135
MroXI	GAANNNNTTC	2 cut(s)	1324, 3364
MslI	CAYNNNNRTG	3 cut(s)	644, 1742, 3138
MspI	CCGG	3 cut(s)	261, 1028, 1036
MspR9I	CCNGG	4 cut(s)	451, 564, 2508, 3434
MunI	CAATTG	1 cut(s)	2784
Mva1269I	GAATGC	4 cut(s)	480, 887, 1918, 2284
MvaI	CCWGG	4 cut(s)	451, 564, 2508, 3434
NheI	GCTAGC	1 cut(s)	1387
NlaIV	GGNNCC	7 cut(s)	30, 856, 1596, 2553, 3087, 3151, 3250
NmuCI	GTSAC	7 cut(s)	334, 425, 445, 1452, 1514, 2560, 2738
NsbI	TGCGCA	1 cut(s)	886
NsiI	ATGCAT	2 cut(s)	1061, 3135
NspI	RCATGY	5 cut(s)	363, 1504, 1539, 1903, 3137
NspV	TTCGAA	1 cut(s)	3297
PaeI	GCATGC	2 cut(s)	1504, 3137
PagI	TCATGA	3 cut(s)	786, 2334, 2841
PciI	ACATGT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	2719
PctI	GAATGC	4 cut(s)	480, 887, 1918, 2284
PdmI	GAANNNNTTC	2 cut(s)	1324, 3364
PfeI	GAWTC	7 cut(s)	222, 524, 769, 932, 2462, 2710, 3048
PflMI	CCANNNNNTGG	1 cut(s)	2735
PfoI	TCCNGGA	2 cut(s)	562, 3432
PkrI	GCNGC	7 cut(s)	44, 112, 186, 500, 1149, 1809, 2503
PleI	GAGTC	7 cut(s)	11, 188, 407, 1892, 1928, 2650, 3164
PmaCI	CACGTG	1 cut(s)	3140
PmlI	CACGTG	1 cut(s)	3140
PpsI	GAGTC	7 cut(s)	11, 188, 407, 1892, 1928, 2650, 3164
Ppu21I	YACGTR	1 cut(s)	3140
PpuMI	RGGWCCY	2 cut(s)	2551, 2630
PscI	ACATGT	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	2412
Psp5II	RGGWCCY	2 cut(s)	2551, 2630
Psp6I	CCWGG	4 cut(s)	449, 562, 2506, 3432
PspCI	CACGTG	1 cut(s)	3140
PspFI	CCCAGC	3 cut(s)	1763, 2075, 2270
PspGI	CCWGG	4 cut(s)	449, 562, 2506, 3432
PspN4I	GGNNCC	7 cut(s)	30, 856, 1596, 2553, 3087, 3151, 3250
PspOMI	GGGCCC	1 cut(s)	1594
PspPPI	RGGWCCY	2 cut(s)	2551, 2630
PsrI	GAACNNNNNNTAC	4 cut(s)	981, 1013, 1312, 1344
PstNI	CAGNNNCTG	1 cut(s)	1909
PsuI	RGATCY	4 cut(s)	735, 745, 841, 1189
RsaI	GTAC	7 cut(s)	9, 413, 505, 825, 1283, 1927, 2782
RsaNI	GTAC	7 cut(s)	8, 412, 504, 824, 1282, 1926, 2781
RseI	CAYNNNNRTG	3 cut(s)	644, 1742, 3138
SatI	GCNGC	7 cut(s)	43, 111, 185, 499, 1148, 1808, 2502
SchI	GAGTC	7 cut(s)	11, 188, 408, 1893, 1929, 2651, 3165
ScrFI	CCNGG	4 cut(s)	451, 564, 2508, 3434
SduI	GDGCHC	3 cut(s)	554, 859, 1598
SfaNI	GCATC	6 cut(s)	1084, 1102, 1350, 2314, 2354, 2463
SfcI	CTRYAG	1 cut(s)	1227
SfiI	GGCCNNNNNGGCC	1 cut(s)	1565
SfuI	TTCGAA	1 cut(s)	3297
SinI	GGWCC	9 cut(s)	28, 948, 1038, 1469, 2551, 2630, 3086, 3118, 3149
SmiMI	CAYNNNNRTG	3 cut(s)	644, 1742, 3138
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
SpeI	ACTAGT	2 cut(s)	806, 1855
SphI	GCATGC	2 cut(s)	1504, 3137
SsiI	CCGC	9 cut(s)	11, 26, 111, 126, 1147, 1439, 1836, 3356, 3463
SspI	AATATT	1 cut(s)	3391
StyD4I	CCNGG	4 cut(s)	449, 562, 2506, 3432
StyI	CCWWGG	2 cut(s)	21, 129
TaaI	ACNGT	7 cut(s)	57, 712, 983, 1228, 1353, 2287, 2875
TaiI	ACGT	5 cut(s)	383, 417, 666, 2821, 3142
TaqII	GACCGA	1 cut(s)	2595
TatI	WGTACW	2 cut(s)	823, 1281
TauI	GCSGC	2 cut(s)	113, 1150
TfiI	GAWTC	7 cut(s)	222, 524, 769, 932, 2462, 2710, 3048
TscAI	CASTG	7 cut(s)	223, 324, 924, 1499, 1744, 2132, 3058
TseFI	GTSAC	7 cut(s)	334, 425, 445, 1452, 1514, 2560, 2738
TseI	GCWGC	5 cut(s)	42, 184, 498, 1807, 2501
Tsp45I	GTSAC	7 cut(s)	334, 425, 445, 1452, 1514, 2560, 2738
TspGWI	ACGGA	4 cut(s)	505, 536, 1913, 2076
TspRI	CASTG	7 cut(s)	223, 324, 924, 1499, 1744, 2132, 3058
Van91I	CCANNNNNTGG	1 cut(s)	2735
VpaK11BI	GGWCC	9 cut(s)	28, 948, 1038, 1469, 2551, 2630, 3086, 3118, 3149
XapI	RAATTY	4 cut(s)	137, 1552, 1778, 3360
XceI	RCATGY	5 cut(s)	363, 1504, 1539, 1903, 3137
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1678, 2245
XmiI	GTMKAC	2 cut(s)	1230, 2725
XmnI	GAANNNNTTC	2 cut(s)	1324, 3364
Zsp2I	ATGCAT	2 cut(s)	1061, 3135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.