Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014030

Physical Location & Seq

Genomic Coordinates Forward (+)

16736786 .. 16737597

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTCACGGCTGACCCTCCCATCTCTGCCACCGGCGTCGGCGTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTACTCATCTCCGCCATCATGCTCGCCTCTTACGCCTGCGTCAAAGTCAAAGCCCATGGCGGTTTTTACAACGACGACTACGACGAGTCCAACTCCCACCGCCGCTCCCCCACCACCACAGGCATCTATTCAGCCGAGCCAATGACGGTCGTGCTGGGCCTCGATGGGCCTACCATAGACTCTTACCCGAAGATAGTTCTCGGGGAAAGCCGGCGGCTGCCTAAGCCGAACGACGGCGTTTGCTCCATCTGCTTGTCGGAGTACCAGGCCAAGGATCCCGTACGGTGCATCCCGGATTGCCATCACTGTTTCCACGTTGAATGCGTAGACGAATGGCTGCGCATGAGTGCCACGTGTCCCGTCTGTAGAAACTCTCCGGCTCCGTCGCCGGGCCCGAGTCCTCTGTCCGATTTGGTACCCCTGGCACTCCATTATTCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

173

Amino Acids

18.53

Weight (kDa)

5.58

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	105 - 149	3.9e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	107 - 149	5.3e-13	Ring finger domain
zf-RING_11	PF17123	107 - 135	7.2e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07040
fragaria_vesca	FvH4_7g04010
malus_domestica	MD00G1152800.v1.1 MD03G1294900.v1.1
prunus_persica	Prupe.2G044600_v2.0.a1
pyrus_communis	pycom02g23630
rosa_chinensis	RchiOBHm_Chr1g0327791
rosa_laevigata	RLG00000029964
rosa_multiflora	Rmu_sc0005527.1_g000012
rosa_rugosa	Rorug01G0071000
rosa_samantha	Rh1AG087100 Rh1BG070300 Rh1CG085200 Rh1DG091600 Rh6BG243000 Rh6CG245000
rosa_wichuraiana	Rw1G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	493
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	5 cut(s)	90, 138, 178, 181, 292
AclWI	GGATC	2 cut(s)	347, 360
AcvI	CACGTG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	36, 42
AfaI	GTAC	4 cut(s)	81, 341, 360, 495
AfiI	CCNNNNNNNGG	3 cut(s)	311, 349, 467
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	342, 498
AlwI	GGATC	2 cut(s)	347, 360
Ama87I	CYCGRG	2 cut(s)	278, 472
AoxI	GGCC	4 cut(s)	235, 245, 345, 469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	295, 415
Asp718I	GGTACC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	4 cut(s)	235, 245, 469, 470
AsuC2I	CCSGG	2 cut(s)	371, 468
AvaI	CYCGRG	2 cut(s)	278, 472
BaeGI	GKGCMC	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	282, 402
BccI	CCATC	6 cut(s)	29, 68, 101, 236, 332, 387
BceAI	ACGGC	4 cut(s)	24, 50, 67, 328
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	344, 500
BcnI	CCSGG	2 cut(s)	371, 468
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	4 cut(s)	181, 293, 296, 416
BlsI	GCNGC	4 cut(s)	182, 294, 297, 417
Bme1390I	CCNGG	4 cut(s)	344, 371, 468, 500
BmeT110I	CYCGRG	2 cut(s)	278, 472
BmgT120I	GGNCC	4 cut(s)	235, 245, 469, 470
BmiI	GGNNCC	4 cut(s)	354, 459, 471, 495
BmrFI	CCNGG	4 cut(s)	344, 371, 468, 500
BmsI	GCATC	3 cut(s)	81, 210, 375
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu10I	CCTNAGC	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	371, 468
BsaAI	YACGTR	2 cut(s)	432, 519
BsaBI	GATNNNNATC	1 cut(s)	378
BsaHI	GRCGYC	2 cut(s)	36, 42
BsaJI	CCNNGG	3 cut(s)	133, 348, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 349, 467
Bse118I	RCCGGY	2 cut(s)	32, 288
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	344, 500
BseDI	CCNNGG	3 cut(s)	133, 348, 498
BseGI	GGATG	2 cut(s)	72, 366
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	311, 349, 467
BseMI	GCAATG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	282, 402
BseYI	CCCAGC	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	4 cut(s)	237, 247, 347, 471
BshNI	GGYRCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	228
BsiHKCI	CYCGRG	2 cut(s)	278, 472
BsiSI	CCGG	5 cut(s)	33, 289, 371, 455, 467
BsiWI	CGTACG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	3 cut(s)	311, 349, 467
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	4 cut(s)	237, 247, 347, 471
BsoBI	CYCGRG	2 cut(s)	278, 472
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	5 cut(s)	90, 138, 178, 181, 292
BspANI	GGCC	4 cut(s)	237, 247, 347, 471
BspLI	GGNNCC	4 cut(s)	354, 459, 471, 495
BspPI	GGATC	2 cut(s)	347, 360
BspT107I	GGYRCC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	32, 288
BssAI	RCCGGY	2 cut(s)	32, 288
BssECI	CCNNGG	3 cut(s)	133, 348, 498
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	2 cut(s)	36, 42
BssT1I	CCWWGG	2 cut(s)	133, 348
Bst2UI	CCWGG	2 cut(s)	344, 500
Bst4CI	ACNGT	3 cut(s)	226, 363, 386
BstACI	GRCGYC	2 cut(s)	36, 42
BstBAI	YACGTR	2 cut(s)	432, 519
BstC8I	GCNNGC	3 cut(s)	102, 115, 290
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	72, 366
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 301, 327
BstNI	CCWGG	2 cut(s)	344, 500
BstSCI	CCNGG	4 cut(s)	342, 369, 466, 498
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	282, 402
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	237, 247, 347, 471
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	72, 366
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	102, 115, 290
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	2 cut(s)	32, 288
Cfr13I	GGNCC	4 cut(s)	235, 245, 469, 470
CseI	GACGC	3 cut(s)	25, 31, 106
Csp6I	GTAC	4 cut(s)	80, 340, 359, 494
CviAII	CATG	3 cut(s)	97, 134, 421
CviQI	GTAC	4 cut(s)	80, 340, 359, 494
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	133, 348
Eco24I	GRGCYC	1 cut(s)	473
Eco72I	CACGTG	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	278, 472
EcoRII	CCWGG	2 cut(s)	342, 498
EcoT14I	CCWWGG	2 cut(s)	133, 348
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	2 cut(s)	133, 348
FaeI	CATG	3 cut(s)	100, 137, 424
FaiI	YATR	4 cut(s)	98, 135, 254, 422
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	96, 133, 420
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	181, 293, 296, 416
FokI	GGATG	2 cut(s)	59, 353
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	4 cut(s)	181, 293, 296, 416
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	4 cut(s)	181, 293, 296, 416
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	237, 247, 347, 471
HapII	CCGG	5 cut(s)	33, 289, 371, 455, 467
HgaI	GACGC	3 cut(s)	25, 31, 106
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	2 cut(s)	36, 42
Hin1II	CATG	3 cut(s)	100, 137, 424
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	164, 257, 475
HpaII	CCGG	5 cut(s)	33, 289, 371, 455, 467
Hpy166II	GTNNAC	2 cut(s)	6, 406
Hpy188I	TCNGA	2 cut(s)	337, 487
Hpy8I	GTNNAC	2 cut(s)	6, 406
Hpy99I	CGWCG	6 cut(s)	41, 47, 155, 164, 314, 466
HpyCH4III	ACNGT	3 cut(s)	226, 363, 386
HpyCH4IV	ACGT	3 cut(s)	393, 431, 518
HpyCH4V	TGCA	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 301, 327
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	3 cut(s)	393, 431, 518
Hsp92I	GRCGYC	2 cut(s)	36, 42
Hsp92II	CATG	3 cut(s)	100, 137, 424
HspAI	GCGC	1 cut(s)	418
KpnI	GGTACC	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	288
KroNI	GCCGGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	188, 326, 463
Lsp1109I	GCAGC	2 cut(s)	282, 402
LweI	GCATC	3 cut(s)	81, 210, 375
MaeII	ACGT	3 cut(s)	393, 431, 518
MalI	GATC	1 cut(s)	354
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	280
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	173, 251, 484
MmeI	TCCRAC	2 cut(s)	192, 315
MnlI	CCTC	5 cut(s)	27, 86, 115, 248, 489
MroNI	GCCGGC	1 cut(s)	288
MspI	CCGG	5 cut(s)	33, 289, 371, 455, 467
MspR9I	CCNGG	4 cut(s)	344, 371, 468, 500
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	344, 500
MwoI	GCNNNNNNNGC	3 cut(s)	110, 301, 327
NaeI	GCCGGC	1 cut(s)	290
NciI	CCSGG	2 cut(s)	371, 468
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	352
NgoMIV	GCCGGC	1 cut(s)	288
NlaIII	CATG	3 cut(s)	100, 137, 424
NlaIV	GGNNCC	4 cut(s)	354, 459, 471, 495
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	4 cut(s)	156, 159, 399, 470
PctI	GAATGC	1 cut(s)	404
PdiI	GCCGGC	1 cut(s)	290
Pfl23II	CGTACG	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	4 cut(s)	182, 294, 297, 417
PleI	GAGTC	3 cut(s)	172, 251, 483
PmaCI	CACGTG	1 cut(s)	432
PmlI	CACGTG	1 cut(s)	432
PpsI	GAGTC	3 cut(s)	172, 251, 483
Ppu21I	YACGTR	2 cut(s)	432, 519
Psp6I	CCWGG	2 cut(s)	342, 498
PspCI	CACGTG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	342, 498
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	4 cut(s)	354, 459, 471, 495
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	4 cut(s)	235, 245, 469, 470
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	4 cut(s)	81, 341, 360, 495
RsaNI	GTAC	4 cut(s)	80, 340, 359, 494
SatI	GCNGC	4 cut(s)	181, 293, 296, 416
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	4 cut(s)	235, 245, 469, 470
SchI	GAGTC	3 cut(s)	173, 251, 484
ScrFI	CCNGG	4 cut(s)	344, 371, 468, 500
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	3 cut(s)	396, 434, 521
SfaNI	GCATC	3 cut(s)	81, 210, 375
SfcI	CTRYAG	1 cut(s)	442
SgrAI	CRCCGGYG	1 cut(s)	32
SsiI	CCGC	5 cut(s)	90, 138, 178, 181, 292
StyD4I	CCNGG	4 cut(s)	342, 369, 466, 498
StyI	CCWWGG	2 cut(s)	133, 348
TaaI	ACNGT	3 cut(s)	226, 363, 386
TaiI	ACGT	3 cut(s)	396, 434, 521
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	2 cut(s)	183, 295
TscAI	CASTG	1 cut(s)	389
TseI	GCWGC	2 cut(s)	295, 415
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.