RchiOBHm_Chr1g0328171

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003479
Physical Location & Seq
Forward (+)
17476676 .. 17477255
580 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGATGAGGCCACGATTATTTGGTTTGATGGTATGCTTATTGTTCTTGGTGGGTGTTTGGGATGTGGTTCCGGTAGCAATGGGGGACACGACACCGAGCCAGTGTAAGGAGGAGAAAAAGCTTCTCGTTGATGCGTGCAAGGCAGTTGTTACAGGAAGTGATCCCTCTGCATACTGCTGCCAACGCCTTAAGGTCACTCATGTTGAGTGTGTATGCCCCTATGTTACTCCCAAGCTTGCCAATCTGCTCAACGTCCCACGTATCATTAAGCAAATTGAAGGTTGCGGAAGGACCGTTCCTCACAACTTCAAGTGTGGAAGTATCACCACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

111

Amino Acids

12.18

Weight (kDa)

8.79

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 105 1.7e-10 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 106
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 278, 310
AloI GAACNNNNNNTCC 2 cut(s) 279, 311
AluBI AGCT 2 cut(s) 121, 235
AluI AGCT 2 cut(s) 121, 235
AlwI GGATC 1 cut(s) 155
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 22
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 84
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 98, 239
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 98, 239
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 155
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 188
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 136, 237
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 140, 183
BstV1I GCAGC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 136, 237
Cfr13I GGNCC 1 cut(s) 291
CviAII CATG 2 cut(s) 200, 333
CviJI RGCY 4 cut(s) 10, 99, 121, 235
CviKI_1 RGCY 4 cut(s) 10, 99, 121, 235
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 291
FaeI CATG 2 cut(s) 203, 336
FaiI YATR 6 cut(s) 34, 172, 201, 214, 222, 334
FaqI GGGAC 2 cut(s) 98, 239
FatI CATG 2 cut(s) 199, 332
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 71
Hin1II CATG 2 cut(s) 203, 336
HindIII AAGCTT 2 cut(s) 119, 233
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 272, 282
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 252, 259
HpyCH4V TGCA 2 cut(s) 138, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 183
HpySE526I ACGT 2 cut(s) 252, 259
Hsp92II CATG 2 cut(s) 203, 336
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 84, 113, 138
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 121
MaeII ACGT 2 cut(s) 252, 259
MaeIII GTNAC 3 cut(s) 148, 193, 223
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 273
MnlI CCTC 3 cut(s) 103, 175, 309
MseI TTAA 2 cut(s) 189, 267
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 140, 183
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 203, 336
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 189, 267
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 291
SetI ASST 6 cut(s) 123, 195, 237, 255, 262, 283
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 285
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 255, 262
TasI AATT 1 cut(s) 273
Tru1I TTAA 2 cut(s) 189, 267
Tru9I TTAA 2 cut(s) 189, 267
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 193
TspRI CASTG 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.