Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002501

Physical Location & Seq

Genomic Coordinates Forward (+)

19161222 .. 19170104

Gene Structure 8883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3183 bp

ATGGATTCCGGTCGCTATGGTCTTCAGCAAGGATGGGATAATAACAGCGCTCCGGAGGGGTATGGTGCAGTTCATGAGCCAAACTTTCGGGTCGGTGGTTCATATGATGAGAGAAGGTTTATAGAGGAAAGGTACTCAAGGGACAATGTTTATCCAAGAAGCACATTCCACCGTGATGTTCTGGATAGGGATAACTACCCACCACCACCTCATGCTGTTGGTATATGGCCAAATTCAAGAAGGAGAAGTTACGAAGAAGAATTTCCCATTGATAGGGAACCTAGGAGGCATGAGAAACAGTACATGGATTCATATCATGAGATGGATAACCTCCGTGATCATGAGATTGATACATTTCAGGAATTTGATAAATTACGGGATGGCTATCACAGTGTTGACAACTATCGGGATCCTGGGTTTGAGAGGACTTCAAGGCTTGGGGGACGTGATCGTGATGATTATGCATATGATGATTTTGACTATAGGTCCGGTATTACCCATAAGACCAGGGGGGACAGTTGTGAAAGGGATTATGACTATGGTCGGCATAGTTATGATTCTGATTATGACAGAGGTAGTAGGAGAGAGGGCAATTGGAGGCGTCGTGAATCTCGTGACCGTGAGCGTGACAAGAAATGTTTAAGTAGGGAAAGAGAAATGAGTCCATATAGAAGGCATGAGCGTTCTAGATCTCGGTCTCGATCTCATGGGCATGATGATCATCCCAGATCAAGGTCACCTAGAAGTCGAAGCCATGGCCGAAGTCATCGAGAGGACAGCTATGATGATGGAAGGTATGAGAGAACTGATAAGCGAAGAGACAGGGATGAGAAACGCCAGAGAGAGCATTATTCTGTGGCCCCATCTGCAACTATTGTTGTGAAGGGTCTTTCACAGAAGACCACTGAGGAAGATCTATACCAGATCCTTGCTGAATGGGGACCTCTTCGTCATGTCCGTGTGATCAAAGAACGTAATTCCGGCATTTCCCGTGGATTTGCTTTTATTGATTTCCCTTCCGTGGGAGCAGCTCGTATTATGATGGACAAACTCGGGGACAATGGGCATGTGGTGGATGGCAGGAAACTATTTTTTGAGTACAGTAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGACAGTACTGGGAAATCTGGCCATGCTAACCATAAAAGCATCACTGTGCCATCTGATTGGATGTGTATCAGCTGTGGATATGTTAATTTTGCACGAAGAACATCCTGCTTTCAGTGTAATGAGGCACGAACTGAGGATGCTCCCGCAGCAGATATTTCTTCATCCAATCAATTGACAGGAAAGAAAGGATCAGAGGCTGGTCCTACTCATGTTTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAATTTTCCAAACATGCTCCTATCAAGGATCTACGTCTTGTCAGAGACAAATTCACTCATGTTTCACGGGGATTTGCGTTTGTACACTTCCATTCGGTGGAAGATGCTACGAAAGCTCTTGAAGCAACAAATGGAACACCACTTGAAAGGAATGGGCAGATTTTAAGAGTAGCATATGCAAAAAGCATTCTTGGTCCAGGATCAGGCATGTCAGGATCTTCACAGTCAAGCAGCCTGGCAGCTGCTGCAATTGAGGCAGCAACATTTGCTCAACAGTATGATGCTGTTGGATGGGCACCAAAGGAATATAATCCAGACGACAAACAATCCACGGGAGGGAAGGAGCAAAGTGGCGGGGATTTAAAAGCAGAAAAAGATGGTTTGGCTCCACAAACTGGTTTTGTATGGGATGAGGCATCCGGTTACTACTATGATGCTTCTTCCGGGTTCTACTATGATGGAAATACAGGTCTCTATTATGATGGTAACAATGGGATTTGGTATTCATATGATCACCAAACTCTGCAGTACATCCCTTGCACTGATCAGAATGGCATCAAAGAATCTGCTAACCAATCTCAGCTTTCGAAGGCATCAGACGGTTCAAGTACCAAAAAAGTAGTCATCTCTGCACCAGCTACAACCTCAGCTGCATCATTACCAGATGCAGTCCAGGCTGCTGCAACAGCAGCGATAGCTGCAGAGAGAAAAGAAAAGGAAAAGTCCAAAGAGATCAAGTTGGCATCAAAGAGTAGTATTTTGGCTAACAAGAAGAAAATGAGTAATGTATTGACTATGTGGAAGCAGAGGAGTCATGAAGGGCAAGTAACCCGTGTAGCTCTAGATGATAACCAGCCAAGTGCACCTGCTAATGATAGACTGGTTTCTTCTGTTCCATCTACAAAGACAAAGTCTAAAATTGATGTACCAACCAAAAATGAGAATACTATATCTAGCTCAGGGGTTACCGCCAATGTTTCTACTGCAGATACTCTTGGTTTAGAGTCTTCAGTCATGCCAAGGCCTGTGGGCAACAGTATAGGAGGGACACTGATGGGAGTGATAAGGGGATCTGGAAGAACTGTAGTAAAATCAGATACATCCTTTTCAGCATCTGGTGGAGTTTCCGCACCTTCAACTTCTGCTGCATGCATAGCAGGTTCTTCTGCATCAACAGATTCGGATATCTCCACTGTTTTGACACCCTTTAGAACTGATGCATCGGCACTAGGTTCTTATACACCACCTGTGGCTGCTGGGAGTGGCAAGAGAAGATTCTCTGAAATGCCAGCTTCTGCTCATAAAGAACCTCATACTGGATACAGGGATCGTGCGGCTGAAAGGAGGAGCTTGTATGGCTCGTCATCTTCTTTTGGTGATGATTTGCCTGAACATGGTTTTGGGGAGTCAAATCGAGACTCGGCATTGAGGAAGGGTTCTTTTGATTCAATGCCTTTCCCCCCTGGTGTTGGTGGAGGACGTGGGACCGGAGATGCAACCATTGACAGTTACGAGGTTATTACAGCCGACAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAGCATGGGCTGGCACGAAGGCTTGGGTTTAGGAAGAGATGGGAGTGGAATGGTGGAACCGGTGCAGGCTCAGAGTGTGGAAAGGAGAGCCGGACTTGGGAGTCAGCAGAAGAAGTTAGATCCGGCTCTTGAGGCTCAGGCTGGAGATAGTTATAAAACTCTCATTCACAAGAAGGCACTGGCTAGGTTCCGGGAGATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0034622 GO:0034641 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048024 GO:0048518 GO:0048522 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1903311

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch RRM_1

Protein Analysis

1060

Amino Acids

117.1

Weight (kDa)

7.43

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	292 - 362	1.7e-11	RNA recognition motif
RRM_1	PF00076	453 - 518	2.7e-17	RNA recognition motif
OCRE	PF17780	600 - 648	1.8e-17	OCRE domain
G-patch	PF01585	985 - 1026	3.7e-14	G-patch domain
G-patch_2	PF12656	985 - 1030	1.4e-06	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54230 AT3G54230 AT3G54230 AT3G54230 AT3G54230
fragaria_vesca	FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410 FvH4_7g04410
malus_domestica	MD00G1152000.v1.1 MD02G1270000.v1.1
prunus_persica	Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1 Prupe.2G049800_v2.0.a1
pyrus_communis	pycom02g23120 pycom07g03700
rosa_chinensis	RchiOBHm_Chr1g0329501
rosa_laevigata	RLG00000029881
rosa_multiflora	Rmu_sc0004805.1_g000032 Rmu_sc0016170.1_g000004
rosa_roxburghii	Rroxscaffold_4G00321020
rosa_rugosa	Rorug01G0081000 Rorug01G0081100
rosa_samantha	Rh1AG099500 Rh1BG079200 Rh1CG095400 Rh1DG103200
rosa_wichuraiana	Rw0G014300 Rw1G007750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3132
AarI	CACCTGC	2 cut(s)	1115, 2281
AasI	GACNNNNNNGTC	2 cut(s)	948, 3078
Acc36I	ACCTGC	3 cut(s)	1115, 2281, 2555
AccB1I	GGYRCC	1 cut(s)	1702
AccB7I	CCANNNNNTGG	2 cut(s)	1504, 1802
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	5 cut(s)	1287, 1761, 2376, 2535, 2741
AcoI	YGGCCR	3 cut(s)	227, 757, 1162
AcsI	RAATTY	5 cut(s)	232, 260, 362, 1409, 1457
AcuI	CTGAAG	2 cut(s)	8, 2400
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	8 cut(s)	134, 302, 1100, 1150, 1491, 1937, 2017, 2334
AfeI	AGCGCT	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	3037
AgsI	TTSAA	7 cut(s)	237, 432, 1529, 1553, 2013, 2544, 2856
AhdI	GACNNNNNGTC	1 cut(s)	484
AjiI	CACGTC	2 cut(s)	446, 2888
AjnI	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
AjuI	GAANNNNNNNTTGG	2 cut(s)	2790, 2822
Alw21I	GWGCWC	1 cut(s)	2272
Alw26I	GTCTC	5 cut(s)	702, 813, 1446, 1883, 2817
Alw44I	GTGCAC	1 cut(s)	2268
AlwNI	CAGNNNCTG	4 cut(s)	1340, 1652, 2522, 2702
Ama87I	CYCGRG	1 cut(s)	1052
Aor13HI	TCCGGA	1 cut(s)	52
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	5 cut(s)	227, 757, 858, 1162, 2429
ApaLI	GTGCAC	1 cut(s)	2268
ApoI	RAATTY	5 cut(s)	232, 260, 362, 1409, 1457
ArsI	GACNNNNNNTTYG	4 cut(s)	2013, 2045, 2303, 2335
AsiGI	ACCGGT	1 cut(s)	3037
Asp700I	GAANNNNTTC	1 cut(s)	261
AspA2I	CCTAGG	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	50, 1404
AspS9I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
AsuC2I	CCSGG	2 cut(s)	1852, 3170
AsuHPI	GGTGA	3 cut(s)	729, 1913, 2795
AsuII	TTCGAA	1 cut(s)	1994
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
AvrII	CCTAGG	1 cut(s)	281
BaeGI	GKGCMC	2 cut(s)	1705, 2272
BalI	TGGCCA	2 cut(s)	229, 1164
BamHI	GGATCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	1702
BauI	CACGAG	1 cut(s)	612
BbsI	GAAGAC	3 cut(s)	14, 905, 2406
Bbv12I	GWGCWC	1 cut(s)	2272
BbvCI	CCTCAGC	1 cut(s)	2053
BciT130I	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
BciVI	GTATCC	1 cut(s)	2720
BclI	TGATCA	5 cut(s)	337, 718, 963, 1918, 1951
BcnI	CCSGG	2 cut(s)	1852, 3170
BcoDI	GTCTC	5 cut(s)	702, 813, 1446, 1883, 2817
BfaI	CTAG	7 cut(s)	282, 687, 741, 2249, 2361, 2636, 3162
BfmI	CTRYAG	5 cut(s)	481, 1931, 2106, 2391, 2490
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	3 cut(s)	1115, 2281, 2555
BfuI	GTATCC	1 cut(s)	2720
BglII	AGATCT	2 cut(s)	689, 913
BlnI	CCTAGG	1 cut(s)	281
BmcAI	AGTACT	1 cut(s)	1150
Bme1390I	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871, 3170
Bme18I	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	1052
BmgBI	CACGTC	2 cut(s)	446, 2888
BmgT120I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
BmiI	GGNNCC	9 cut(s)	279, 411, 861, 942, 1704, 1794, 2893, 3036, 3167
BmrFI	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871, 3170
BmrI	ACTGGG	2 cut(s)	1125, 1161
BmuI	ACTGGG	2 cut(s)	1125, 1161
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	3 cut(s)	14, 905, 2406
BpmI	CTGGAG	1 cut(s)	3141
Bpu10I	CCTNAGC	3 cut(s)	2053, 2365, 3114
Bpu14I	TTCGAA	1 cut(s)	1994
BpuEI	CTTGAG	2 cut(s)	121, 3128
BpuMI	CCSGG	2 cut(s)	1852, 3170
BsaBI	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BsaHI	GRCGYC	1 cut(s)	601
BsaI	GGTCTC	2 cut(s)	702, 1883
BsaJI	CCNNGG	9 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2426, 2869
BsaWI	WCCGGW	6 cut(s)	8, 52, 488, 1826, 2894, 3037
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bse118I	RCCGGY	1 cut(s)	3037
Bse1I	ACTGG	7 cut(s)	1120, 1156, 1377, 1807, 2292, 2728, 3162
Bse3DI	GCAATG	1 cut(s)	2962
Bse8I	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
BseDI	CCNNGG	9 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2426, 2869
BseJI	GATNNNNATC	4 cut(s)	312, 384, 720, 1208
BseMI	GCAATG	1 cut(s)	2962
BseMII	CTCAG	7 cut(s)	897, 1266, 2000, 2067, 2379, 3062, 3128
BseNI	ACTGG	7 cut(s)	1120, 1156, 1377, 1807, 2292, 2728, 3162
BseRI	GAGGAG	2 cut(s)	2230, 2767
BseSI	GKGCMC	2 cut(s)	1705, 2272
BseYI	CCCAGC	1 cut(s)	2663
BsgI	GTGCAG	4 cut(s)	87, 1143, 2022, 3062
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
BshNI	GGYRCC	1 cut(s)	1702
BshTI	ACCGGT	1 cut(s)	3037
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	2272
BsiHKCI	CYCGRG	1 cut(s)	1052
BslFI	GGGAC	7 cut(s)	155, 456, 527, 954, 1070, 2467, 2905
BsmAI	GTCTC	5 cut(s)	702, 813, 1446, 1883, 2817
BsmFI	GGGAC	7 cut(s)	155, 456, 527, 954, 1070, 2467, 2905
BsmI	GAATGC	1 cut(s)	1593
BsnI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
Bso31I	GGTCTC	2 cut(s)	702, 1883
BsoBI	CYCGRG	1 cut(s)	1052
Bsp119I	TTCGAA	1 cut(s)	1994
Bsp1286I	GDGCHC	2 cut(s)	1705, 2272
Bsp13I	TCCGGA	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	1489
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	5 cut(s)	1287, 1761, 2376, 2535, 2741
BspANI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
BspCNI	CTCAG	7 cut(s)	898, 1267, 1999, 2066, 2378, 3061, 3127
BspEI	TCCGGA	1 cut(s)	52
BspHI	TCATGA	4 cut(s)	73, 316, 340, 2221
BspLI	GGNNCC	9 cut(s)	279, 411, 861, 942, 1704, 1794, 2893, 3036, 3167
BspMAI	CTGCAG	3 cut(s)	1935, 2110, 2395
BspMI	ACCTGC	3 cut(s)	1115, 2281, 2555
BspT104I	TTCGAA	1 cut(s)	1994
BspT107I	GGYRCC	1 cut(s)	1702
BspTNI	GGTCTC	2 cut(s)	702, 1883
BsrDI	GCAATG	1 cut(s)	2962
BsrFI	RCCGGY	1 cut(s)	3037
BsrGI	TGTACA	1 cut(s)	1489
BsrI	ACTGG	7 cut(s)	1120, 1156, 1377, 1807, 2292, 2728, 3162
BssAI	RCCGGY	1 cut(s)	3037
BssECI	CCNNGG	9 cut(s)	281, 413, 507, 754, 991, 1020, 1737, 2426, 2869
BssNI	GRCGYC	1 cut(s)	601
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	3 cut(s)	281, 754, 2426
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
Bst6I	CTCTTC	3 cut(s)	811, 951, 3007
BstACI	GRCGYC	1 cut(s)	601
BstAPI	GCANNNNNTGC	2 cut(s)	1652, 1673
BstAUI	TGTACA	1 cut(s)	1489
BstBI	TTCGAA	1 cut(s)	1994
BstC8I	GCNNGC	4 cut(s)	2557, 2697, 2990, 3045
BstDEI	CTNAG	7 cut(s)	906, 1275, 1986, 2053, 2365, 3048, 3114
BstDSI	CCRYGG	4 cut(s)	754, 991, 1020, 1737
BstEII	GGTNACC	2 cut(s)	735, 2371
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 1404
BstMAI	GTCTC	5 cut(s)	702, 813, 1446, 1883, 2817
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
BstNSI	RCATGY	4 cut(s)	1070, 1424, 1618, 2559
BstPAI	GACNNNNGTC	1 cut(s)	540
BstPI	GGTNACC	2 cut(s)	735, 2371
BstSCI	CCNGG	8 cut(s)	412, 506, 1603, 1641, 1850, 2079, 2869, 3168
BstSFI	CTRYAG	5 cut(s)	481, 1931, 2106, 2391, 2490
BstSLI	GKGCMC	2 cut(s)	1705, 2272
BstV2I	GAAGAC	3 cut(s)	14, 905, 2406
BstX2I	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477, 3097
BstXI	CCANNNNNNTGG	1 cut(s)	1200
BstYI	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477, 3097
BsuI	GTATCC	1 cut(s)	2720
BsuRI	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
BtgI	CCRYGG	4 cut(s)	754, 991, 1020, 1737
BtrI	CACGTC	2 cut(s)	446, 2888
BtsIMutI	CAGTG	8 cut(s)	397, 903, 1185, 1262, 1947, 2456, 2598, 3155
BveI	ACCTGC	3 cut(s)	1115, 2281, 2555
Cac8I	GCNNGC	4 cut(s)	2557, 2697, 2990, 3045
CaiI	CAGNNNCTG	4 cut(s)	1340, 1652, 2522, 2702
CciI	TCATGA	4 cut(s)	73, 316, 340, 2221
CfoI	GCGC	2 cut(s)	50, 1404
Cfr10I	RCCGGY	1 cut(s)	3037
Cfr13I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1936, 2016, 2333
CspAI	ACCGGT	1 cut(s)	3037
CspCI	CAANNNNNGTGG	2 cut(s)	2415, 2450
CviQI	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1936, 2016, 2333
DdeI	CTNAG	7 cut(s)	906, 1275, 1986, 2053, 2365, 3048, 3114
DraI	TTTAAA	1 cut(s)	1770
DrdI	GACNNNNNNGTC	2 cut(s)	948, 3078
DriI	GACNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	2 cut(s)	948, 3078
EaeI	YGGCCR	3 cut(s)	227, 757, 1162
Eam1104I	CTCTTC	3 cut(s)	811, 951, 3007
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	3 cut(s)	811, 951, 3007
Eco130I	CCWWGG	3 cut(s)	281, 754, 2426
Eco147I	AGGCCT	1 cut(s)	2431
Eco31I	GGTCTC	2 cut(s)	702, 1883
Eco32I	GATATC	1 cut(s)	2593
Eco47I	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
Eco47III	AGCGCT	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	8, 2400
Eco88I	CYCGRG	1 cut(s)	1052
Eco91I	GGTNACC	2 cut(s)	735, 2371
EcoO109I	RGGNCCY	1 cut(s)	941
EcoO65I	GGTNACC	2 cut(s)	735, 2371
EcoRII	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
EcoRV	GATATC	1 cut(s)	2593
EcoT14I	CCWWGG	3 cut(s)	281, 754, 2426
EcoT22I	ATGCAT	3 cut(s)	466, 2561, 2629
ErhI	CCWWGG	3 cut(s)	281, 754, 2426
FaqI	GGGAC	7 cut(s)	155, 456, 527, 954, 1070, 2467, 2905
FauI	CCCGC	2 cut(s)	1294, 1754
FauNDI	CATATG	4 cut(s)	103, 466, 1582, 1915
FbaI	TGATCA	5 cut(s)	337, 718, 963, 1918, 1951
FspBI	CTAG	7 cut(s)	282, 687, 741, 2249, 2361, 2636, 3162
GlaI	GCGC	2 cut(s)	49, 1403
GsaI	CCCAGC	1 cut(s)	2667
GsuI	CTGGAG	1 cut(s)	3141
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	5 cut(s)	229, 759, 860, 1164, 2431
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	50, 1404
Hin1I	GRCGYC	1 cut(s)	601
Hin6I	GCGC	2 cut(s)	48, 1402
HinP1I	GCGC	2 cut(s)	48, 1402
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HphI	GGTGA	3 cut(s)	729, 1913, 2795
Hpy166II	GTNNAC	4 cut(s)	397, 1370, 1492, 2270
Hpy8I	GTNNAC	4 cut(s)	397, 1370, 1492, 2270
Hpy99I	CGWCG	1 cut(s)	606
HpyCH4IV	ACGT	4 cut(s)	445, 973, 1441, 2887
HpyF3I	CTNAG	7 cut(s)	906, 1275, 1986, 2053, 2365, 3048, 3114
HpySE526I	ACGT	4 cut(s)	445, 973, 1441, 2887
Hsp92I	GRCGYC	1 cut(s)	601
HspAI	GCGC	2 cut(s)	48, 1402
Kpn2I	TCCGGA	1 cut(s)	52
Ksp22I	TGATCA	5 cut(s)	337, 718, 963, 1918, 1951
LmnI	GCTCC	7 cut(s)	55, 1025, 1288, 1429, 1750, 1798, 2754
MaeI	CTAG	7 cut(s)	282, 687, 741, 2249, 2361, 2636, 3162
MaeII	ACGT	4 cut(s)	445, 973, 1441, 2887
MaeIII	GTNAC	9 cut(s)	248, 614, 626, 735, 1829, 1892, 2233, 2371, 2915
MfeI	CAATTG	4 cut(s)	592, 1313, 1656, 2943
MflI	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477, 3097
MhlI	GDGCHC	2 cut(s)	1705, 2272
MlsI	TGGCCA	2 cut(s)	229, 1164
MluNI	TGGCCA	2 cut(s)	229, 1164
MlyI	GAGTC	6 cut(s)	670, 2227, 2420, 2819, 2822, 3088
MmeI	TCCRAC	1 cut(s)	1675
Mox20I	TGGCCA	2 cut(s)	229, 1164
Mph1103I	ATGCAT	3 cut(s)	466, 2561, 2629
MroI	TCCGGA	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	2 cut(s)	229, 1164
MseI	TTAA	4 cut(s)	641, 1227, 1571, 1769
MslI	CAYNNNNRTG	5 cut(s)	174, 552, 711, 957, 1187
Msp20I	TGGCCA	2 cut(s)	229, 1164
MspA1I	CMGCKG	3 cut(s)	1215, 1649, 2057
MspR9I	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871, 3170
MunI	CAATTG	4 cut(s)	592, 1313, 1656, 2943
Mva1269I	GAATGC	1 cut(s)	1593
MvaI	CCWGG	6 cut(s)	414, 508, 1605, 1643, 2081, 2871
NciI	CCSGG	2 cut(s)	1852, 3170
NcoI	CCATGG	1 cut(s)	754
NdeI	CATATG	4 cut(s)	103, 466, 1582, 1915
NlaIV	GGNNCC	9 cut(s)	279, 411, 861, 942, 1704, 1794, 2893, 3036, 3167
NmeAIII	GCCGAG	1 cut(s)	2807
NmuCI	GTSAC	3 cut(s)	614, 626, 735
NsiI	ATGCAT	3 cut(s)	466, 2561, 2629
NspI	RCATGY	4 cut(s)	1070, 1424, 1618, 2559
NspV	TTCGAA	1 cut(s)	1994
PaeI	GCATGC	1 cut(s)	2559
PagI	TCATGA	4 cut(s)	73, 316, 340, 2221
PaqCI	CACCTGC	2 cut(s)	1115, 2281
PceI	AGGCCT	1 cut(s)	2431
PcsI	WCGNNNNNNNCGW	2 cut(s)	610, 955
PctI	GAATGC	1 cut(s)	1593
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	8 cut(s)	5, 308, 557, 608, 1970, 2585, 2682, 2852
PflFI	GACNNNGTC	1 cut(s)	2317
PflMI	CCANNNNNTGG	2 cut(s)	1504, 1802
PfoI	TCCNGGA	2 cut(s)	1603, 3168
PinAI	ACCGGT	1 cut(s)	3037
PleI	GAGTC	6 cut(s)	669, 2226, 2419, 2819, 2821, 3087
PpsI	GAGTC	6 cut(s)	669, 2226, 2419, 2819, 2821, 3087
PpuMI	RGGWCCY	1 cut(s)	941
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	3132
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
PspEI	GGTNACC	2 cut(s)	735, 2371
PspFI	CCCAGC	1 cut(s)	2663
PspGI	CCWGG	6 cut(s)	412, 506, 1603, 1641, 2079, 2869
PspN4I	GGNNCC	9 cut(s)	279, 411, 861, 942, 1704, 1794, 2893, 3036, 3167
PspPI	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
PspPPI	RGGWCCY	1 cut(s)	941
PstI	CTGCAG	3 cut(s)	1935, 2110, 2395
PstNI	CAGNNNCTG	4 cut(s)	1340, 1652, 2522, 2702
PsuI	RGATCY	9 cut(s)	409, 689, 913, 924, 1130, 1435, 1622, 2477, 3097
PsyI	GACNNNGTC	1 cut(s)	2317
PvuII	CAGCTG	3 cut(s)	1215, 1649, 2057
RsaI	GTAC	8 cut(s)	134, 302, 1100, 1150, 1491, 1937, 2017, 2334
RsaNI	GTAC	8 cut(s)	133, 301, 1099, 1149, 1490, 1936, 2016, 2333
RseI	CAYNNNNRTG	5 cut(s)	174, 552, 711, 957, 1187
SaqAI	TTAA	4 cut(s)	641, 1227, 1571, 1769
Sau96I	GGNCC	6 cut(s)	486, 859, 941, 1343, 1601, 2892
ScaI	AGTACT	1 cut(s)	1150
SchI	GAGTC	6 cut(s)	670, 2227, 2420, 2819, 2822, 3088
ScrFI	CCNGG	8 cut(s)	414, 508, 1605, 1643, 1852, 2081, 2871, 3170
SduI	GDGCHC	2 cut(s)	1705, 2272
SfcI	CTRYAG	5 cut(s)	481, 1931, 2106, 2391, 2490
SfuI	TTCGAA	1 cut(s)	1994
SinI	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
SmiMI	CAYNNNNRTG	5 cut(s)	174, 552, 711, 957, 1187
SmlI	CTYRAG	2 cut(s)	136, 3107
SmoI	CTYRAG	2 cut(s)	136, 3107
SphI	GCATGC	1 cut(s)	2559
SseBI	AGGCCT	1 cut(s)	2431
SsiI	CCGC	5 cut(s)	1287, 1761, 2376, 2535, 2741
SspMI	CTAG	7 cut(s)	282, 687, 741, 2249, 2361, 2636, 3162
StuI	AGGCCT	1 cut(s)	2431
StyD4I	CCNGG	8 cut(s)	412, 506, 1603, 1641, 1850, 2079, 2869, 3168
StyI	CCWWGG	3 cut(s)	281, 754, 2426
TaiI	ACGT	4 cut(s)	448, 976, 1444, 2890
TaqI	TCGA	5 cut(s)	700, 748, 769, 1994, 2821
TaqII	GACCGA	1 cut(s)	684
TatI	WGTACW	5 cut(s)	300, 1098, 1148, 1489, 1935
TauI	GCSGC	1 cut(s)	2744
TfiI	GAWTC	8 cut(s)	5, 308, 557, 608, 1970, 2585, 2682, 2852
Tru1I	TTAA	4 cut(s)	641, 1227, 1571, 1769
Tru9I	TTAA	4 cut(s)	641, 1227, 1571, 1769
TscAI	CASTG	8 cut(s)	397, 910, 1192, 1262, 1954, 2463, 2605, 3162
TseFI	GTSAC	3 cut(s)	614, 626, 735
Tsp45I	GTSAC	3 cut(s)	614, 626, 735
TspDTI	ATGAA	8 cut(s)	62, 90, 300, 1293, 1392, 1422, 1902, 2238
TspGWI	ACGGA	3 cut(s)	323, 947, 1009
TspRI	CASTG	8 cut(s)	397, 910, 1192, 1262, 1954, 2463, 2605, 3162
Tth111I	GACNNNGTC	1 cut(s)	2317
Van91I	CCANNNNNTGG	2 cut(s)	1504, 1802
VneI	GTGCAC	1 cut(s)	2268
VpaK11BI	GGWCC	5 cut(s)	486, 941, 1343, 1601, 2892
XapI	RAATTY	5 cut(s)	232, 260, 362, 1409, 1457
XbaI	TCTAGA	2 cut(s)	686, 2248
XceI	RCATGY	4 cut(s)	1070, 1424, 1618, 2559
XmaJI	CCTAGG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	7 cut(s)	282, 687, 741, 2249, 2361, 2636, 3162
ZrmI	AGTACT	1 cut(s)	1150
Zsp2I	ATGCAT	3 cut(s)	466, 2561, 2629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.