Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17900 AT3G17900 |
| fragaria_vesca | FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 FvH4_4g31960 |
| malus_domestica | MD13G1079000.v1.1 MD16G1078700.v1.1 |
| prunus_persica | Prupe.1G267800_v2.0.a1 Prupe.1G267800_v2.0.a1 |
| pyrus_communis | pycom13g06860 pycom16g06810 |
| rosa_chinensis | RchiOBHm_Chr1g0331861 RchiOBHm_Chr1g0331881 RchiOBHm_Chr1g0353921 RchiOBHm_Chr4g0440641 |
| rosa_laevigata | RLG00000006164 RLG00000029707 |
| rosa_multiflora | Rmu_co8243009.1_g000001 Rmu_sc0001915.1_g000004 Rmu_sc0005552.1_g000001 Rmu_sc0007658.1_g000002 Rmu_sc0008018.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00301470 Rroxscaffold_5G00381450 |
| rosa_rugosa | Rorug01G0239400 Rorug04G0327100 |
| rosa_samantha | Rh1AG250900 Rh1BG221700 Rh1CG234700 Rh1DG248700 Rh4AG379000 Rh4BG391800 Rh4CG406300 |
| rosa_wichuraiana | Rw1G021890 Rw4G032550 Rw4G032590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1264 |
| Acc36I | ACCTGC | 1 cut(s) | 1264 |
| AccB1I | GGYRCC | 1 cut(s) | 1160 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2021, 2180 |
| AccBSI | CCGCTC | 1 cut(s) | 345 |
| AccI | GTMKAC | 1 cut(s) | 1019 |
| AccII | CGCG | 2 cut(s) | 1395, 1954 |
| AccIII | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| AciI | CCGC | 5 cut(s) | 343, 707, 1502, 1866, 1952 |
| AclWI | GGATC | 5 cut(s) | 587, 648, 851, 1317, 1974 |
| AcoI | YGGCCR | 1 cut(s) | 2400 |
| AcsI | RAATTY | 6 cut(s) | 4, 850, 1485, 1684, 1750, 2146 |
| AfaI | GTAC | 7 cut(s) | 33, 42, 553, 1001, 1104, 2344, 2488 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 300, 1184, 2021, 2180, 2330, 2398 |
| AflIII | ACRYGT | 4 cut(s) | 28, 37, 367, 789 |
| AjnI | CCWGG | 3 cut(s) | 358, 1438, 2188 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2025, 2057 |
| AleI | CACNNNNGTG | 1 cut(s) | 2350 |
| Alw21I | GWGCWC | 2 cut(s) | 2014, 2505 |
| Alw26I | GTCTC | 5 cut(s) | 690, 871, 912, 2032, 2212 |
| Alw44I | GTGCAC | 1 cut(s) | 2010 |
| AlwI | GGATC | 5 cut(s) | 587, 648, 851, 1317, 1974 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2242, 2312 |
| Ama87I | CYCGRG | 1 cut(s) | 2539 |
| Aor13HI | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| AoxI | GGCC | 1 cut(s) | 2400 |
| ApaLI | GTGCAC | 1 cut(s) | 2010 |
| ApoI | RAATTY | 6 cut(s) | 4, 850, 1485, 1684, 1750, 2146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 332, 364 |
| AseI | ATTAAT | 1 cut(s) | 2517 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 369, 624, 1751 |
| AspLEI | GCGC | 2 cut(s) | 82, 1395 |
| AspS9I | GGNCC | 3 cut(s) | 104, 340, 1057 |
| AsuC2I | CCSGG | 1 cut(s) | 2108 |
| AsuHPI | GGTGA | 7 cut(s) | 374, 578, 728, 952, 1715, 1778, 2145 |
| AsuII | TTCGAA | 1 cut(s) | 631 |
| AvaI | CYCGRG | 1 cut(s) | 2539 |
| AvaII | GGWCC | 3 cut(s) | 104, 340, 1057 |
| BaeGI | GKGCMC | 1 cut(s) | 2014 |
| BanI | GGYRCC | 1 cut(s) | 1160 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1003, 1035 |
| BbsI | GAAGAC | 3 cut(s) | 747, 1308, 1841 |
| Bbv12I | GWGCWC | 2 cut(s) | 2014, 2505 |
| BccI | CCATC | 7 cut(s) | 258, 766, 770, 1343, 1443, 2414, 2429 |
| BceAI | ACGGC | 1 cut(s) | 2415 |
| BciT130I | CCWGG | 3 cut(s) | 360, 1440, 2190 |
| BciVI | GTATCC | 3 cut(s) | 400, 1900, 2149 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcnI | CCSGG | 1 cut(s) | 2108 |
| BcoDI | GTCTC | 5 cut(s) | 690, 871, 912, 2032, 2212 |
| BfaI | CTAG | 7 cut(s) | 21, 615, 782, 1790, 1826, 2007, 2375 |
| BfmI | CTRYAG | 3 cut(s) | 438, 1020, 1479 |
| BfuAI | ACCTGC | 1 cut(s) | 1264 |
| BfuI | GTATCC | 3 cut(s) | 400, 1900, 2149 |
| BglII | AGATCT | 1 cut(s) | 2083 |
| Bme1390I | CCNGG | 4 cut(s) | 360, 1440, 2108, 2190 |
| Bme18I | GGWCC | 3 cut(s) | 104, 340, 1057 |
| BmeT110I | CYCGRG | 1 cut(s) | 2539 |
| BmgT120I | GGNCC | 3 cut(s) | 104, 340, 1057 |
| BmiI | GGNNCC | 3 cut(s) | 802, 1059, 1162 |
| BmrFI | CCNGG | 4 cut(s) | 360, 1440, 2108, 2190 |
| BmrI | ACTGGG | 1 cut(s) | 1315 |
| BmsI | GCATC | 5 cut(s) | 247, 298, 1437, 1576, 1820 |
| BmuI | ACTGGG | 1 cut(s) | 1315 |
| BpiI | GAAGAC | 3 cut(s) | 747, 1308, 1841 |
| BpmI | CTGGAG | 5 cut(s) | 1098, 1536, 2043, 2289, 2435 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1029, 2499 |
| Bpu14I | TTCGAA | 1 cut(s) | 631 |
| BpuMI | CCSGG | 1 cut(s) | 2108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 138 |
| BsaI | GGTCTC | 1 cut(s) | 690 |
| BsaJI | CCNNGG | 3 cut(s) | 2106, 2189, 2538 |
| BsaWI | WCCGGW | 4 cut(s) | 73, 185, 1054, 1184 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 909, 939 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 300, 1184, 2021, 2180, 2330, 2398 |
| Bse118I | RCCGGY | 1 cut(s) | 43 |
| Bse1I | ACTGG | 7 cut(s) | 208, 1275, 1310, 1765, 1873, 2306, 2529 |
| Bse3DI | GCAATG | 1 cut(s) | 815 |
| Bse8I | GATNNNNATC | 1 cut(s) | 138 |
| BseAI | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| BseBI | CCWGG | 3 cut(s) | 360, 1440, 2190 |
| BseDI | CCNNGG | 3 cut(s) | 2106, 2189, 2538 |
| BseGI | GGATG | 7 cut(s) | 259, 269, 610, 781, 1181, 2384, 2525 |
| BseJI | GATNNNNATC | 1 cut(s) | 138 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 300, 1184, 2021, 2180, 2330, 2398 |
| BseMI | GCAATG | 1 cut(s) | 815 |
| BseMII | CTCAG | 7 cut(s) | 738, 759, 1043, 1205, 1708, 2262, 2490 |
| BseNI | ACTGG | 7 cut(s) | 208, 1275, 1310, 1765, 1873, 2306, 2529 |
| BseRI | GAGGAG | 4 cut(s) | 1101, 1122, 1468, 1622 |
| BseSI | GKGCMC | 1 cut(s) | 2014 |
| BsgI | GTGCAG | 1 cut(s) | 1242 |
| Bsh1236I | CGCG | 2 cut(s) | 1395, 1954 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1952 |
| BshFI | GGCC | 1 cut(s) | 2402 |
| BshNI | GGYRCC | 1 cut(s) | 1160 |
| BsiEI | CGRYCG | 1 cut(s) | 1952 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2014, 2505 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2539 |
| BsiSI | CCGG | 6 cut(s) | 44, 74, 186, 1055, 1185, 2108 |
| BslFI | GGGAC | 1 cut(s) | 706 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 300, 1184, 2021, 2180, 2330, 2398 |
| BsmAI | GTCTC | 5 cut(s) | 690, 871, 912, 2032, 2212 |
| BsmFI | GGGAC | 1 cut(s) | 706 |
| BsmI | GAATGC | 1 cut(s) | 1711 |
| BsnI | GGCC | 1 cut(s) | 2402 |
| Bso31I | GGTCTC | 1 cut(s) | 690 |
| BsoBI | CYCGRG | 1 cut(s) | 2539 |
| Bsp119I | TTCGAA | 1 cut(s) | 631 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2014, 2505 |
| Bsp13I | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| Bsp1407I | TGTACA | 2 cut(s) | 31, 2342 |
| Bsp143I | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| BspACI | CCGC | 5 cut(s) | 343, 707, 1502, 1866, 1952 |
| BspANI | GGCC | 1 cut(s) | 2402 |
| BspCNI | CTCAG | 7 cut(s) | 739, 760, 1042, 1204, 1707, 2261, 2491 |
| BspEI | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| BspFNI | CGCG | 2 cut(s) | 1395, 1954 |
| BspHI | TCATGA | 1 cut(s) | 241 |
| BspLI | GGNNCC | 3 cut(s) | 802, 1059, 1162 |
| BspMAI | CTGCAG | 1 cut(s) | 442 |
| BspMI | ACCTGC | 1 cut(s) | 1264 |
| BspPI | GGATC | 5 cut(s) | 587, 648, 851, 1317, 1974 |
| BspQI | GCTCTTC | 1 cut(s) | 1701 |
| BspT104I | TTCGAA | 1 cut(s) | 631 |
| BspT107I | GGYRCC | 1 cut(s) | 1160 |
| BspTNI | GGTCTC | 1 cut(s) | 690 |
| BsrBI | CCGCTC | 1 cut(s) | 345 |
| BsrDI | GCAATG | 1 cut(s) | 815 |
| BsrFI | RCCGGY | 1 cut(s) | 43 |
| BsrGI | TGTACA | 2 cut(s) | 31, 2342 |
| BsrI | ACTGG | 7 cut(s) | 208, 1275, 1310, 1765, 1873, 2306, 2529 |
| BssAI | RCCGGY | 1 cut(s) | 43 |
| BssECI | CCNNGG | 3 cut(s) | 2106, 2189, 2538 |
| BssMI | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| Bst2UI | CCWGG | 3 cut(s) | 360, 1440, 2190 |
| Bst4CI | ACNGT | 5 cut(s) | 147, 1004, 1270, 1629, 2098 |
| Bst6I | CTCTTC | 4 cut(s) | 1331, 1701, 2061, 2463 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2018 |
| BstAUI | TGTACA | 2 cut(s) | 31, 2342 |
| BstBI | TTCGAA | 1 cut(s) | 631 |
| BstC8I | GCNNGC | 1 cut(s) | 1663 |
| BstDEI | CTNAG | 8 cut(s) | 747, 768, 1029, 1191, 1281, 1694, 2248, 2499 |
| BstF5I | GGATG | 7 cut(s) | 259, 269, 610, 781, 1181, 2384, 2525 |
| BstFNI | CGCG | 2 cut(s) | 1395, 1954 |
| BstHHI | GCGC | 2 cut(s) | 82, 1395 |
| BstKTI | GATC | 9 cut(s) | 166, 559, 595, 643, 859, 1297, 1312, 1969, 2086 |
| BstMAI | GTCTC | 5 cut(s) | 690, 871, 912, 2032, 2212 |
| BstMBI | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| BstMCI | CGRYCG | 1 cut(s) | 1952 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 158, 1805, 1865, 2018 |
| BstNI | CCWGG | 3 cut(s) | 360, 1440, 2190 |
| BstNSI | RCATGY | 5 cut(s) | 32, 41, 371, 399, 1562 |
| BstSCI | CCNGG | 4 cut(s) | 358, 1438, 2106, 2188 |
| BstSFI | CTRYAG | 3 cut(s) | 438, 1020, 1479 |
| BstSLI | GKGCMC | 1 cut(s) | 2014 |
| BstUI | CGCG | 2 cut(s) | 1395, 1954 |
| BstV2I | GAAGAC | 3 cut(s) | 747, 1308, 1841 |
| BstX2I | RGATCY | 2 cut(s) | 1966, 2083 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1573, 1944, 2413 |
| BstYI | RGATCY | 2 cut(s) | 1966, 2083 |
| BsuI | GTATCC | 3 cut(s) | 400, 1900, 2149 |
| BsuRI | GGCC | 1 cut(s) | 2402 |
| BtsCI | GGATG | 7 cut(s) | 259, 269, 610, 781, 1181, 2384, 2525 |
| BtsI | GCAGTG | 1 cut(s) | 1672 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 1672 |
| BveI | ACCTGC | 1 cut(s) | 1264 |
| Cac8I | GCNNGC | 1 cut(s) | 1663 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2242, 2312 |
| CciI | TCATGA | 1 cut(s) | 241 |
| CfoI | GCGC | 2 cut(s) | 82, 1395 |
| Cfr10I | RCCGGY | 1 cut(s) | 43 |
| Cfr13I | GGNCC | 3 cut(s) | 104, 340, 1057 |
| CseI | GACGC | 1 cut(s) | 1974 |
| Csp6I | GTAC | 7 cut(s) | 32, 41, 552, 1000, 1103, 2343, 2487 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1744, 1779 |
| CviAII | CATG | 9 cut(s) | 29, 38, 197, 242, 368, 396, 1062, 1222, 1559 |
| CviQI | GTAC | 7 cut(s) | 32, 41, 552, 1000, 1103, 2343, 2487 |
| DdeI | CTNAG | 8 cut(s) | 747, 768, 1029, 1191, 1281, 1694, 2248, 2499 |
| DpnI | GATC | 9 cut(s) | 165, 558, 594, 642, 858, 1296, 1311, 1968, 2085 |
| DpnII | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| DraI | TTTAAA | 3 cut(s) | 430, 462, 1930 |
| EaeI | YGGCCR | 1 cut(s) | 2400 |
| Eam1104I | CTCTTC | 4 cut(s) | 1331, 1701, 2061, 2463 |
| EarI | CTCTTC | 4 cut(s) | 1331, 1701, 2061, 2463 |
| Eco31I | GGTCTC | 1 cut(s) | 690 |
| Eco32I | GATATC | 1 cut(s) | 1977 |
| Eco47I | GGWCC | 3 cut(s) | 104, 340, 1057 |
| Eco88I | CYCGRG | 1 cut(s) | 2539 |
| EcoRI | GAATTC | 1 cut(s) | 2146 |
| EcoRII | CCWGG | 3 cut(s) | 358, 1438, 2188 |
| EcoRV | GATATC | 1 cut(s) | 1977 |
| FaeI | CATG | 9 cut(s) | 32, 41, 200, 245, 371, 399, 1065, 1225, 1562 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1274, 1306, 1843, 1875 |
| FaqI | GGGAC | 1 cut(s) | 706 |
| FatI | CATG | 9 cut(s) | 28, 37, 196, 241, 367, 395, 1061, 1221, 1558 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| FblI | GTMKAC | 1 cut(s) | 1019 |
| FokI | GGATG | 7 cut(s) | 266, 276, 617, 788, 1168, 2391, 2512 |
| FspBI | CTAG | 7 cut(s) | 21, 615, 782, 1790, 1826, 2007, 2375 |
| GlaI | GCGC | 2 cut(s) | 81, 1394 |
| GsuI | CTGGAG | 5 cut(s) | 1098, 1536, 2043, 2289, 2435 |
| HaeIII | GGCC | 1 cut(s) | 2402 |
| HapII | CCGG | 6 cut(s) | 44, 74, 186, 1055, 1185, 2108 |
| HgaI | GACGC | 1 cut(s) | 1974 |
| HhaI | GCGC | 2 cut(s) | 82, 1395 |
| Hin1II | CATG | 9 cut(s) | 32, 41, 200, 245, 371, 399, 1065, 1225, 1562 |
| Hin6I | GCGC | 2 cut(s) | 80, 1393 |
| HinP1I | GCGC | 2 cut(s) | 80, 1393 |
| HincII | GTYRAC | 1 cut(s) | 26 |
| HindII | GTYRAC | 1 cut(s) | 26 |
| HindIII | AAGCTT | 3 cut(s) | 1288, 2280, 2298 |
| HpaII | CCGG | 6 cut(s) | 44, 74, 186, 1055, 1185, 2108 |
| HphI | GGTGA | 7 cut(s) | 374, 578, 728, 952, 1715, 1778, 2145 |
| Hpy166II | GTNNAC | 8 cut(s) | 26, 365, 1020, 1625, 1820, 2012, 2196, 2345 |
| Hpy8I | GTNNAC | 8 cut(s) | 26, 365, 1020, 1625, 1820, 2012, 2196, 2345 |
| Hpy99I | CGWCG | 1 cut(s) | 1361 |
| HpyAV | CCTTC | 8 cut(s) | 254, 580, 635, 1418, 1532, 1838, 2139, 2166 |
| HpyCH4III | ACNGT | 5 cut(s) | 147, 1004, 1270, 1629, 2098 |
| HpyCH4IV | ACGT | 4 cut(s) | 168, 246, 791, 1101 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 158, 1805, 1865, 2018 |
| HpyF3I | CTNAG | 8 cut(s) | 747, 768, 1029, 1191, 1281, 1694, 2248, 2499 |
| HpySE526I | ACGT | 4 cut(s) | 168, 246, 791, 1101 |
| Hsp92II | CATG | 9 cut(s) | 32, 41, 200, 245, 371, 399, 1065, 1225, 1562 |
| HspAI | GCGC | 2 cut(s) | 80, 1393 |
| Kpn2I | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| LguI | GCTCTTC | 1 cut(s) | 1701 |
| LmnI | GCTCC | 3 cut(s) | 350, 1390, 2416 |
| LweI | GCATC | 5 cut(s) | 247, 298, 1437, 1576, 1820 |
| MaeI | CTAG | 7 cut(s) | 21, 615, 782, 1790, 1826, 2007, 2375 |
| MaeII | ACGT | 4 cut(s) | 168, 246, 791, 1101 |
| MaeIII | GTNAC | 4 cut(s) | 1214, 1352, 1638, 1667 |
| MalI | GATC | 9 cut(s) | 165, 558, 594, 642, 858, 1296, 1311, 1968, 2085 |
| MbiI | CCGCTC | 1 cut(s) | 345 |
| MboI | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| MfeI | CAATTG | 2 cut(s) | 156, 1644 |
| MflI | RGATCY | 2 cut(s) | 1966, 2083 |
| MhlI | GDGCHC | 2 cut(s) | 2014, 2505 |
| MlyI | GAGTC | 7 cut(s) | 212, 719, 728, 1348, 1922, 2034, 2179 |
| MmeI | TCCRAC | 1 cut(s) | 151 |
| MroI | TCCGGA | 3 cut(s) | 73, 185, 1054 |
| MroXI | GAANNNNTTC | 3 cut(s) | 369, 624, 1751 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2350, 2377 |
| MspA1I | CMGCKG | 1 cut(s) | 1868 |
| MspI | CCGG | 6 cut(s) | 44, 74, 186, 1055, 1185, 2108 |
| MspR9I | CCNGG | 4 cut(s) | 360, 1440, 2108, 2190 |
| MunI | CAATTG | 2 cut(s) | 156, 1644 |
| Mva1269I | GAATGC | 1 cut(s) | 1711 |
| MvaI | CCWGG | 3 cut(s) | 360, 1440, 2190 |
| MvnI | CGCG | 2 cut(s) | 1395, 1954 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 158, 1805, 1865, 2018 |
| NciI | CCSGG | 1 cut(s) | 2108 |
| NdeII | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| NlaIII | CATG | 9 cut(s) | 32, 41, 200, 245, 371, 399, 1065, 1225, 1562 |
| NlaIV | GGNNCC | 3 cut(s) | 802, 1059, 1162 |
| NmeAIII | GCCGAG | 1 cut(s) | 2239 |
| NmuCI | GTSAC | 1 cut(s) | 1667 |
| NspI | RCATGY | 5 cut(s) | 32, 41, 371, 399, 1562 |
| NspV | TTCGAA | 1 cut(s) | 631 |
| OliI | CACNNNNGTG | 1 cut(s) | 2350 |
| PagI | TCATGA | 1 cut(s) | 241 |
| PaqCI | CACCTGC | 1 cut(s) | 1264 |
| PciI | ACATGT | 3 cut(s) | 28, 37, 367 |
| PciSI | GCTCTTC | 1 cut(s) | 1701 |
| PctI | GAATGC | 1 cut(s) | 1711 |
| PdmI | GAANNNNTTC | 3 cut(s) | 369, 624, 1751 |
| PfeI | GAWTC | 7 cut(s) | 134, 182, 274, 620, 761, 982, 2545 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2021, 2180 |
| PleI | GAGTC | 7 cut(s) | 212, 718, 727, 1347, 1921, 2033, 2178 |
| PpsI | GAGTC | 7 cut(s) | 212, 718, 727, 1347, 1921, 2033, 2178 |
| PscI | ACATGT | 3 cut(s) | 28, 37, 367 |
| PshBI | ATTAAT | 1 cut(s) | 2517 |
| Psp6I | CCWGG | 3 cut(s) | 358, 1438, 2188 |
| PspGI | CCWGG | 3 cut(s) | 358, 1438, 2188 |
| PspN4I | GGNNCC | 3 cut(s) | 802, 1059, 1162 |
| PspPI | GGNCC | 3 cut(s) | 104, 340, 1057 |
| PstI | CTGCAG | 1 cut(s) | 442 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2242, 2312 |
| PsuI | RGATCY | 2 cut(s) | 1966, 2083 |
| RsaI | GTAC | 7 cut(s) | 33, 42, 553, 1001, 1104, 2344, 2488 |
| RsaNI | GTAC | 7 cut(s) | 32, 41, 552, 1000, 1103, 2343, 2487 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2350, 2377 |
| SapI | GCTCTTC | 1 cut(s) | 1701 |
| Sau3AI | GATC | 9 cut(s) | 163, 556, 592, 640, 856, 1294, 1309, 1966, 2083 |
| Sau96I | GGNCC | 3 cut(s) | 104, 340, 1057 |
| SchI | GAGTC | 7 cut(s) | 212, 719, 728, 1348, 1922, 2034, 2179 |
| ScrFI | CCNGG | 4 cut(s) | 360, 1440, 2108, 2190 |
| SduI | GDGCHC | 2 cut(s) | 2014, 2505 |
| SfaNI | GCATC | 5 cut(s) | 247, 298, 1437, 1576, 1820 |
| SfcI | CTRYAG | 3 cut(s) | 438, 1020, 1479 |
| SfuI | TTCGAA | 1 cut(s) | 631 |
| SinI | GGWCC | 3 cut(s) | 104, 340, 1057 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2350, 2377 |
| SsiI | CCGC | 5 cut(s) | 343, 707, 1502, 1866, 1952 |
| SspI | AATATT | 2 cut(s) | 663, 1570 |
| SspMI | CTAG | 7 cut(s) | 21, 615, 782, 1790, 1826, 2007, 2375 |
| StyD4I | CCNGG | 4 cut(s) | 358, 1438, 2106, 2188 |
| TaaI | ACNGT | 5 cut(s) | 147, 1004, 1270, 1629, 2098 |
| TaiI | ACGT | 4 cut(s) | 171, 249, 794, 1104 |
| TaqI | TCGA | 2 cut(s) | 631, 1375 |
| TatI | WGTACW | 3 cut(s) | 31, 2342, 2486 |
| TfiI | GAWTC | 7 cut(s) | 134, 182, 274, 620, 761, 982, 2545 |
| TscAI | CASTG | 2 cut(s) | 208, 1672 |
| TseFI | GTSAC | 1 cut(s) | 1667 |
| Tsp45I | GTSAC | 1 cut(s) | 1667 |
| TspGWI | ACGGA | 1 cut(s) | 1925 |
| TspRI | CASTG | 2 cut(s) | 208, 1672 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2021, 2180 |
| VneI | GTGCAC | 1 cut(s) | 2010 |
| VpaK11BI | GGWCC | 3 cut(s) | 104, 340, 1057 |
| VspI | ATTAAT | 1 cut(s) | 2517 |
| XapI | RAATTY | 6 cut(s) | 4, 850, 1485, 1684, 1750, 2146 |
| XbaI | TCTAGA | 1 cut(s) | 781 |
| XceI | RCATGY | 5 cut(s) | 32, 41, 371, 399, 1562 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1446, 2410 |
| XmiI | GTMKAC | 1 cut(s) | 1019 |
| XmnI | GAANNNNTTC | 3 cut(s) | 369, 624, 1751 |
| XspI | CTAG | 7 cut(s) | 21, 615, 782, 1790, 1826, 2007, 2375 |