Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013123

Physical Location & Seq

Genomic Coordinates Forward (+)

24600607 .. 24605704

Gene Structure 5098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAGTCTCTTTCTCCCTCCGCAACATTCACCATATCCAACAGCTACTCATTCAGAGCTAACAAAACCCACTCCCAAACCCCTTGTACCAACCTCAGATTCCCCATCTCACAAACCCATCAAAACCCATCAACTTTTTGTCTCAGTTGTTGCAACAAGTGTTTTTCTATTAAAGCATGTGCAGCTTCAACATCAACAGCACCCTCAGCTTCAACTTCCCGCCACTGGATGGTGCTCATGGAGACTCCTCCACAAGGGGTCATTTCCAAACAACAAGTTATTGAATACTATGTTAAAACCCTTCAAAGAGTTTTGGGAAATGAGAAGGATGCTCAGATGTGTATATATGATGCTTCTTGGGATACCCATTTTGGCTTTTGCTGTGATGTTGATGATGAAACTTCCCAGAAGCTTGCACGTTTACCGGGGGTTTTATCAGTTAAGCCTGACCCAGATTTTGGTTCTGTGAAAAAGGATTACAGTTTTTCAAATGTTCAAAGTGCAAGTACTCTGTTATTTCCACTTGGGAATACCAAACACTGGCTTGTTCGAATGGATAAACCGGGGATTGGCGTTGTTACAAAGGCGCAAATGGTTGATTATTATGCTCAAATACTAACAAAGGTCTTGGGAAATGAGAAAGATGCACAAATGTGTATATATCATGTTTCGTGGAAATCTAACTTTGGCTTCTGTTGTGAACTTGATGAAGAATCTGCAAGCAATATTGCAAGTGTTCCTGGTGTTTTATCTGTTCAGCCAGACAAGAGTTATGACTCAGAAAATAAAGACTATGGAGCTAATGACATAAAGACTAAGGATGTGTCAATCTCTGCGGAGGCAAGTCAAACAACCCCCACAAGAACAAAGAAGCTTTTTGTGACTGGCTTATCATTTTATACATCTGAGAAAACCCTCCGAGAAGCATTTGAAGGCTTTGGTCAGCTTGTTGAAGTAAAAATAATAATGGACAAGATTTCTAAAAGGTCCAAAGGCTATGCATTCATAGAATACACTACAGAGGAAGCTGCTGCTGCTGCACTCAATGAGATGAATGGCAAGATCATTAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTAGCCCTCCAAGATATAGCAGGGGCCAAAGCAGATCAGCAGCAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

384

Amino Acids

42.49

Weight (kDa)

8.48

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	74 - 164	2e-40	Multiple organellar RNA editing factor 1, MORF domain
MORF_dom	PF21864	179 - 268	8.1e-39	Multiple organellar RNA editing factor 1, MORF domain
RRM_1	PF00076	292 - 358	3.1e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20930 AT3G20930
fragaria_vesca	FvH4_7g05760 FvH4_7g05760
malus_domestica	MD02G1255600.v1.1
prunus_persica	Prupe.2G080000_v2.0.a1 Prupe.2G080400_v2.0.a1
pyrus_communis	pycom02g21650
rosa_chinensis	RchiOBHm_Chr1g0332801
rosa_laevigata	RLG00000029643
rosa_multiflora	Rmu_ssc0000157.1_g000008
rosa_roxburghii	Rroxscaffold_4G00317970
rosa_rugosa	Rorug01G0103600
rosa_samantha	Rh1AG128400 Rh1BG097600 Rh1CG122200 Rh1DG134000
rosa_wichuraiana	Rw1G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	229, 458, 540
AciI	CCGC	3 cut(s)	21, 220, 836
AfaI	GTAC	2 cut(s)	88, 508
AfiI	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
AgsI	TTSAA	8 cut(s)	189, 213, 284, 305, 489, 497, 932, 953
AjnI	CCWGG	1 cut(s)	739
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	652
AluBI	AGCT	9 cut(s)	45, 59, 185, 209, 412, 800, 874, 946, 1028
AluI	AGCT	9 cut(s)	45, 59, 185, 209, 412, 800, 874, 946, 1028
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	3 cut(s)	12, 146, 236
AoxI	GGCC	1 cut(s)	1126
ApeKI	GCWGC	6 cut(s)	182, 1028, 1031, 1034, 1037, 1142
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AseI	ATTAAT	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	2 cut(s)	987, 1126
AsuC2I	CCSGG	2 cut(s)	426, 564
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	987
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	194, 1015, 1018, 1021, 1024
BccI	CCATC	4 cut(s)	113, 126, 136, 223
BciT130I	CCWGG	1 cut(s)	741
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	426, 564
BcoDI	GTCTC	3 cut(s)	12, 146, 236
BfaI	CTAG	1 cut(s)	1104
BfmI	CTRYAG	1 cut(s)	1017
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	6 cut(s)	183, 1029, 1032, 1035, 1038, 1143
BlsI	GCNGC	6 cut(s)	184, 1030, 1033, 1036, 1039, 1144
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	426, 564, 741
Bme18I	GGWCC	1 cut(s)	987
BmgT120I	GGNCC	2 cut(s)	987, 1126
BmiI	GGNNCC	1 cut(s)	1127
BmrFI	CCNGG	3 cut(s)	426, 564, 741
BmsI	GCATC	3 cut(s)	319, 340, 634
Bpu10I	CCTNAGC	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	550
BpuMI	CCSGG	2 cut(s)	426, 564
BsaJI	CCNNGG	2 cut(s)	425, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	1093, 1123
Bsc4I	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
Bse1I	ACTGG	3 cut(s)	230, 545, 889
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	425, 563
BseGI	GGATG	4 cut(s)	234, 334, 826, 1083
BseLI	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
BseMII	CTCAG	6 cut(s)	109, 157, 219, 347, 792, 897
BseNI	ACTGG	3 cut(s)	230, 545, 889
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	5 cut(s)	194, 1015, 1018, 1021, 1024
BsgI	GTGCAG	2 cut(s)	201, 1023
BshFI	GGCC	1 cut(s)	1128
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	425, 563
BslI	CCNNNNNNNGG	6 cut(s)	225, 229, 254, 458, 540, 569
BsmAI	GTCTC	3 cut(s)	12, 146, 236
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	1 cut(s)	1128
Bsp119I	TTCGAA	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	1062, 1136
BspACI	CCGC	3 cut(s)	21, 220, 836
BspANI	GGCC	1 cut(s)	1128
BspCNI	CTCAG	6 cut(s)	108, 156, 218, 346, 791, 898
BspLI	GGNNCC	1 cut(s)	1127
BspT104I	TTCGAA	1 cut(s)	550
BsrI	ACTGG	3 cut(s)	230, 545, 889
BssECI	CCNNGG	2 cut(s)	425, 563
BssMI	GATC	2 cut(s)	1062, 1136
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	414, 721
BstDEI	CTNAG	7 cut(s)	95, 143, 205, 333, 778, 816, 906
BstENI	CCTNNNNNAGG	1 cut(s)	252
BstF5I	GGATG	4 cut(s)	234, 334, 826, 1083
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	2 cut(s)	1065, 1139
BstMAI	GTCTC	3 cut(s)	12, 146, 236
BstMBI	GATC	2 cut(s)	1062, 1136
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 206, 1034, 1037
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	3 cut(s)	424, 562, 739
BstSFI	CTRYAG	1 cut(s)	1017
BstV1I	GCAGC	5 cut(s)	194, 1015, 1018, 1021, 1024
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	1128
BtsCI	GGATG	4 cut(s)	234, 334, 826, 1083
BtsIMutI	CAGTG	2 cut(s)	223, 538
Cac8I	GCNNGC	2 cut(s)	414, 721
CfoI	GCGC	1 cut(s)	589
Cfr13I	GGNCC	2 cut(s)	987, 1126
Csp6I	GTAC	2 cut(s)	87, 507
CviAII	CATG	3 cut(s)	177, 238, 665
CviQI	GTAC	2 cut(s)	87, 507
DdeI	CTNAG	7 cut(s)	95, 143, 205, 333, 778, 816, 906
DpnI	GATC	2 cut(s)	1064, 1138
DpnII	GATC	2 cut(s)	1062, 1136
Eco47I	GGWCC	1 cut(s)	987
EcoNI	CCTNNNNNAGG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	1003
FaeI	CATG	3 cut(s)	180, 241, 668
FatI	CATG	3 cut(s)	176, 237, 664
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	6 cut(s)	183, 1029, 1032, 1035, 1038, 1143
FokI	GGATG	4 cut(s)	241, 341, 833, 1090
Fsp4HI	GCNGC	6 cut(s)	183, 1029, 1032, 1035, 1038, 1143
FspBI	CTAG	1 cut(s)	1104
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	6 cut(s)	183, 1029, 1032, 1035, 1038, 1143
HaeIII	GGCC	1 cut(s)	1128
HapII	CCGG	2 cut(s)	425, 563
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	3 cut(s)	180, 241, 668
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	2 cut(s)	410, 872
HinfI	GANTC	4 cut(s)	99, 244, 713, 776
HpaII	CCGG	2 cut(s)	425, 563
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	422, 701
Hpy188I	TCNGA	6 cut(s)	56, 98, 336, 781, 907, 920
Hpy8I	GTNNAC	2 cut(s)	422, 701
HpyAV	CCTTC	3 cut(s)	311, 319, 926
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	9 cut(s)	153, 182, 416, 503, 647, 719, 731, 1001, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 206, 1034, 1037
HpyF3I	CTNAG	7 cut(s)	95, 143, 205, 333, 778, 816, 906
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	180, 241, 668
HspAI	GCGC	1 cut(s)	587
Kzo9I	GATC	2 cut(s)	1062, 1136
LmnI	GCTCC	1 cut(s)	797
Lsp1109I	GCAGC	5 cut(s)	194, 1015, 1018, 1021, 1024
LweI	GCATC	3 cut(s)	319, 340, 634
MaeI	CTAG	1 cut(s)	1104
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	577, 880
MalI	GATC	2 cut(s)	1064, 1138
MboI	GATC	2 cut(s)	1062, 1136
MboII	GAAGA	1 cut(s)	722
MhlI	GDGCHC	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	238, 770
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	28, 104, 214, 258, 832, 926, 1015, 1119
Mph1103I	ATGCAT	1 cut(s)	1003
MseI	TTAA	4 cut(s)	171, 294, 441, 1068
MslI	CAYNNNNRTG	1 cut(s)	652
MspI	CCGG	2 cut(s)	425, 563
MspR9I	CCNGG	3 cut(s)	426, 564, 741
Mva1269I	GAATGC	1 cut(s)	1001
MvaI	CCWGG	1 cut(s)	741
MwoI	GCNNNNNNNGC	4 cut(s)	182, 206, 1034, 1037
NciI	CCSGG	2 cut(s)	426, 564
NdeII	GATC	2 cut(s)	1062, 1136
NlaIII	CATG	3 cut(s)	180, 241, 668
NlaIV	GGNNCC	1 cut(s)	1127
NmuCI	GTSAC	1 cut(s)	880
NsiI	ATGCAT	1 cut(s)	1003
NspI	RCATGY	1 cut(s)	180
NspV	TTCGAA	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	652
PctI	GAATGC	1 cut(s)	1001
PfeI	GAWTC	2 cut(s)	99, 713
PflMI	CCANNNNNTGG	3 cut(s)	229, 458, 540
PkrI	GCNGC	6 cut(s)	184, 1030, 1033, 1036, 1039, 1144
PleI	GAGTC	2 cut(s)	238, 770
PpsI	GAGTC	2 cut(s)	238, 770
PshBI	ATTAAT	1 cut(s)	1068
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	1127
PspPI	GGNCC	2 cut(s)	987, 1126
RsaI	GTAC	2 cut(s)	88, 508
RsaNI	GTAC	2 cut(s)	87, 507
RseI	CAYNNNNRTG	1 cut(s)	652
SaqAI	TTAA	4 cut(s)	171, 294, 441, 1068
SatI	GCNGC	6 cut(s)	183, 1029, 1032, 1035, 1038, 1143
Sau3AI	GATC	2 cut(s)	1062, 1136
Sau96I	GGNCC	2 cut(s)	987, 1126
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	2 cut(s)	238, 770
ScrFI	CCNGG	3 cut(s)	426, 564, 741
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	319, 340, 634
SfcI	CTRYAG	1 cut(s)	1017
SfuI	TTCGAA	1 cut(s)	550
SinI	GGWCC	1 cut(s)	987
SmiMI	CAYNNNNRTG	1 cut(s)	652
SsiI	CCGC	3 cut(s)	21, 220, 836
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	1104
StyD4I	CCNGG	3 cut(s)	424, 562, 739
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	550
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	2 cut(s)	99, 713
Tru1I	TTAA	4 cut(s)	171, 294, 441, 1068
Tru9I	TTAA	4 cut(s)	171, 294, 441, 1068
TscAI	CASTG	2 cut(s)	230, 545
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	6 cut(s)	182, 1028, 1031, 1034, 1037, 1142
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	5 cut(s)	17, 411, 723, 994, 1067
TspRI	CASTG	2 cut(s)	230, 545
Van91I	CCANNNNNTGG	3 cut(s)	229, 458, 540
VpaK11BI	GGWCC	1 cut(s)	987
VspI	ATTAAT	1 cut(s)	1068
XagI	CCTNNNNNAGG	1 cut(s)	252
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	1 cut(s)	1104
ZrmI	AGTACT	1 cut(s)	508
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.