RchiOBHm_Chr1g0334161

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
26307544 .. 26312138
4595 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1557 bp
ATGGACGCGCTCCAAGGAGCTAGCCAAATCGGGCTGGTTTTGCAGCAGGCGAAAGCGCCACTGATCGTGCCGCTGTTGCGAGTTTTGGTGGCGGTGTGCTTGGGGATGTCTGTGCTGCTCTTTGTGGAGAAGGTGTACATGGGAATTGTCATAATGTTGGTCAAGGTTTTCAGAAGAAGACCTGAGAAGCGTTGGAAATGGGAGGCAATAAAGGATGATGTGGAGCTTGGCAATTCTGCTTACCCTATGGTTCTTGTGCAAATTCCAATGTACAATGAAAAAGAGGTTTATCAGCTTTCTATTGGAGCTGCATGTGGGCTTTCATGGCCTTCTGATAGGATCGTAGTTCAAGTTCTTGATGATTCAACTGACCCTCTCATTAAGGATTTGGTGGAAGTAGAAGTGCAGAGATGGGCAAGCAAAGGAATAAACATAAAGTACGAGGTCAGAGACAACAGAAAAGGGTACAAAGCAGGGGCTCTCAAAGAGGGAATGAAGCACTCTTACGTCAAACAGTGTGACTACGTCGCCATTTTTGATGCCGACTTCCAACCTGAGCCCGATTTTCTGTGGCGCACAATCCCATTTCTCCTCCACAACCCTGATATTGCTCTTGTCCAAGCTCGCTGGAAATATGTAAACGCTGATGAGTGCTTAATGACCAGAATGCAAGAGATGTCTCTAGATTACCATTTCACAGTGGAGCAAGAAGTTGGGTCTGCTACTCATGCCTTCTTTGGTTTCAATGGCACAGCTGGAGTGTGGAGAATCACGGCCCTCAATGAGGCTGGAGGATGGAAGGACCGCACAACAGTGGAGGATATGGATTTAGCTGTCCGAGCTAGTCTTAGAGGCTGGAAGTTCGTCTATATTTCTGACCTCAAGGTGAAAAATGAATTGCCCAGTACTTTCAAAGCCTACCGTTATCAGCAGCACCGTTGGTCTTGTGGTCCAGCTAATCTCTTCCGGAAGATGGTAATGGAGATTTTAAGAAACAAGAAGGTGTCCCCATTGAAGAAGCTTCATGTGATCTACAGCTTTTTCTTTGTTCGCAAAATTGTAGCACATATTGTCACCTTTGTCTTCTACTGTGTTATTTTACCAGCAACGGTTTTGGTTCCTGAAGTTCAAGTTCCCATTTGGGGTGCTGTATACATTCCTTCTACCATTACTCTCCTCAATGCAGTTGGAACTCCTAGATCACTCCACCTATTGATTTTCTGGATTCTCTTTGAGAATGTAATGTCCCTGCACCGGACTAAGGCAACATTTATAGGCCTGTTTGAAGCAGGGAGAGTAAATGAATGGGTCGTCACCGAGAAATTGGGAGATGCTCTCAAGACAAAATCAGCTGCAAAAGCTCACCGGAAACCTCGACTAAGGATCGGAGAAAGACTCCATTTGCTTGAGCTCATTGTTGGACTCTACCTCTTCTTCTGTGGGTGCTATGATCTTGCTTATGGAAAGAACCGCTTCTTCATCTACCTTTTCCTCCAGTCCACTGCTTTCTTCATTGCCGGGGTTGGTTATGTTGGCACCTTCATCCCTAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

59.22

Weight (kDa)

9.28

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 82 - 317 1.2e-17 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 87 - 243 1.3e-11 Glycosyl transferase family 2
Glyco_trans_2_3 PF13632 175 - 368 1.8e-20 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1535
AccI GTMKAC 1 cut(s) 1152
AccII CGCG 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 966
AciI CCGC 4 cut(s) 71, 92, 805, 1471
AclWI GGATC 2 cut(s) 347, 1391
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 1143
AfaI GTAC 5 cut(s) 137, 272, 440, 467, 907
AfiI CCNNNNNNNGG 5 cut(s) 784, 973, 1142, 1254, 1261
AgsI TTSAA 7 cut(s) 350, 366, 745, 913, 1015, 1130, 1286
AleI CACNNNNGTG 1 cut(s) 812
Alw21I GWGCWC 1 cut(s) 1413
Alw26I GTCTC 2 cut(s) 444, 684
AlwI GGATC 2 cut(s) 347, 1391
Aor13HI TCCGGA 1 cut(s) 966
AoxI GGCC 3 cut(s) 326, 774, 1276
ApeKI GCWGC 5 cut(s) 43, 115, 308, 931, 1352
ApoI RAATTY 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 1472
AspLEI GCGC 3 cut(s) 10, 58, 576
AspS9I GGNCC 3 cut(s) 775, 802, 950
AsuC2I CCSGG 1 cut(s) 1519
AsuHPI GGTGA 4 cut(s) 898, 1066, 1306, 1355
AsuNHI GCTAGC 1 cut(s) 20
AvaII GGWCC 2 cut(s) 802, 950
BanI GGYRCC 1 cut(s) 1535
BanII GRGCYC 3 cut(s) 481, 561, 1413
BarI GAAGNNNNNNTAC 2 cut(s) 488, 520
BbsI GAAGAC 2 cut(s) 184, 1075
Bbv12I GWGCWC 1 cut(s) 1413
BbvI GCAGC 5 cut(s) 55, 102, 295, 943, 1339
BccI CCATC 3 cut(s) 405, 789, 967
BceAI ACGGC 1 cut(s) 789
BcnI CCSGG 1 cut(s) 1519
BcoDI GTCTC 2 cut(s) 444, 684
BfaI CTAG 5 cut(s) 21, 683, 843, 1197, 1548
BfmI CTRYAG 1 cut(s) 1033
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 6 cut(s) 44, 71, 116, 309, 932, 1353
BlsI GCNGC 6 cut(s) 45, 72, 117, 310, 933, 1354
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 1 cut(s) 1519
Bme18I GGWCC 2 cut(s) 802, 950
BmgT120I GGNCC 3 cut(s) 775, 802, 950
BmiI GGNNCC 2 cut(s) 1119, 1537
BmrFI CCNGG 1 cut(s) 1519
BmrI ACTGGG 1 cut(s) 897
BmsI GCATC 2 cut(s) 529, 1321
BmtI GCTAGC 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 897
BpiI GAAGAC 2 cut(s) 184, 1075
BplI GAGNNNNNCTC 4 cut(s) 1320, 1352, 1380, 1412
BpmI CTGGAG 3 cut(s) 777, 810, 1478
Bpu10I CCTNAGC 1 cut(s) 555
BpuEI CTTGAG 3 cut(s) 866, 1322, 1427
BpuMI CCSGG 1 cut(s) 1519
BsaJI CCNNGG 2 cut(s) 13, 1518
BsaWI WCCGGW 3 cut(s) 966, 1254, 1365
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 5 cut(s) 784, 973, 1142, 1254, 1261
Bse1I ACTGG 2 cut(s) 903, 1495
Bse3DI GCAATG 1 cut(s) 1512
BseAI TCCGGA 1 cut(s) 966
BseDI CCNNGG 2 cut(s) 13, 1518
BseGI GGATG 4 cut(s) 111, 220, 800, 1542
BseLI CCNNNNNNNGG 5 cut(s) 784, 973, 1142, 1254, 1261
BseMI GCAATG 1 cut(s) 1512
BseMII CTCAG 2 cut(s) 174, 546
BseNI ACTGG 2 cut(s) 903, 1495
BseRI GAGGAG 2 cut(s) 581, 1166
BseXI GCAGC 5 cut(s) 55, 102, 295, 943, 1339
BsgI GTGCAG 2 cut(s) 425, 1235
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 328, 776, 1278
BshNI GGYRCC 1 cut(s) 1535
BsiHKAI GWGCWC 1 cut(s) 1413
BsiSI CCGG 4 cut(s) 967, 1255, 1366, 1518
BslFI GGGAC 2 cut(s) 991, 1231
BslI CCNNNNNNNGG 5 cut(s) 784, 973, 1142, 1254, 1261
BsmAI GTCTC 2 cut(s) 444, 684
BsmFI GGGAC 2 cut(s) 991, 1231
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 3 cut(s) 328, 776, 1278
Bsp1286I GDGCHC 3 cut(s) 481, 561, 1413
Bsp13I TCCGGA 1 cut(s) 966
Bsp1407I TGTACA 2 cut(s) 135, 270
Bsp143I GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
BspACI CCGC 4 cut(s) 71, 92, 805, 1471
BspANI GGCC 3 cut(s) 328, 776, 1278
BspCNI CTCAG 2 cut(s) 175, 547
BspEI TCCGGA 1 cut(s) 966
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 1119, 1537
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 2 cut(s) 347, 1391
BspT107I GGYRCC 1 cut(s) 1535
BsrDI GCAATG 1 cut(s) 1512
BsrGI TGTACA 2 cut(s) 135, 270
BsrI ACTGG 2 cut(s) 903, 1495
BssECI CCNNGG 2 cut(s) 13, 1518
BssMI GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
BssNAI GTATAC 1 cut(s) 1153
BssT1I CCWWGG 1 cut(s) 13
Bst1107I GTATAC 1 cut(s) 1153
Bst4CI ACNGT 7 cut(s) 516, 700, 814, 923, 938, 1091, 1111
Bst6I CTCTTC 2 cut(s) 968, 1436
BstAUI TGTACA 2 cut(s) 135, 270
BstC8I GCNNGC 4 cut(s) 22, 48, 418, 625
BstDEI CTNAG 5 cut(s) 183, 555, 848, 1260, 1379
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 4 cut(s) 111, 220, 800, 1542
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 3 cut(s) 10, 58, 576
BstKTI GATC 6 cut(s) 66, 342, 1032, 1202, 1386, 1453
BstMAI GTCTC 2 cut(s) 444, 684
BstMBI GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
BstMWI GCNNNNNNNGC 6 cut(s) 40, 76, 325, 728, 839, 1358
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 1517
BstSFI CTRYAG 1 cut(s) 1033
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 5 cut(s) 55, 102, 295, 943, 1339
BstV2I GAAGAC 2 cut(s) 184, 1075
BstZ17I GTATAC 1 cut(s) 1153
BsuRI GGCC 3 cut(s) 328, 776, 1278
BtsCI GGATG 4 cut(s) 111, 220, 800, 1542
BtsI GCAGTG 1 cut(s) 1500
BtsIMutI CAGTG 5 cut(s) 59, 521, 705, 819, 1500
Cac8I GCNNGC 4 cut(s) 22, 48, 418, 625
CfoI GCGC 3 cut(s) 10, 58, 576
Cfr13I GGNCC 3 cut(s) 775, 802, 950
CseI GACGC 1 cut(s) 14
Csp6I GTAC 5 cut(s) 136, 271, 439, 466, 906
CviAII CATG 5 cut(s) 139, 312, 324, 728, 1025
CviQI GTAC 5 cut(s) 136, 271, 439, 466, 906
DdeI CTNAG 5 cut(s) 183, 555, 848, 1260, 1379
DpnI GATC 6 cut(s) 65, 341, 1031, 1201, 1385, 1452
DpnII GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
Eam1104I CTCTTC 2 cut(s) 968, 1436
EarI CTCTTC 2 cut(s) 968, 1436
Ecl136II GAGCTC 1 cut(s) 1411
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 1278
Eco24I GRGCYC 3 cut(s) 481, 561, 1413
Eco47I GGWCC 2 cut(s) 802, 950
Eco53kI GAGCTC 1 cut(s) 1411
Eco57I CTGAAG 1 cut(s) 1143
EcoICRI GAGCTC 1 cut(s) 1411
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 3 cut(s) 481, 561, 1413
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 5 cut(s) 142, 315, 327, 731, 1028
FalI AAGNNNNNCTT 2 cut(s) 1457, 1489
FaqI GGGAC 2 cut(s) 991, 1231
FatI CATG 5 cut(s) 138, 311, 323, 727, 1024
FblI GTMKAC 1 cut(s) 1152
Fnu4HI GCNGC 6 cut(s) 44, 71, 116, 309, 932, 1353
FokI GGATG 4 cut(s) 118, 227, 807, 1529
FriOI GRGCYC 3 cut(s) 481, 561, 1413
Fsp4HI GCNGC 6 cut(s) 44, 71, 116, 309, 932, 1353
FspBI CTAG 5 cut(s) 21, 683, 843, 1197, 1548
GlaI GCGC 3 cut(s) 9, 57, 575
GluI GCNGC 6 cut(s) 44, 71, 116, 309, 932, 1353
GsuI CTGGAG 3 cut(s) 777, 810, 1478
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 3 cut(s) 328, 776, 1278
HapII CCGG 4 cut(s) 967, 1255, 1366, 1518
HgaI GACGC 1 cut(s) 14
HhaI GCGC 3 cut(s) 10, 58, 576
Hin1II CATG 5 cut(s) 142, 315, 327, 731, 1028
Hin6I GCGC 3 cut(s) 8, 56, 574
HinP1I GCGC 3 cut(s) 8, 56, 574
HindIII AAGCTT 1 cut(s) 1019
HinfI GANTC 5 cut(s) 362, 768, 1225, 1395, 1422
HpaII CCGG 4 cut(s) 967, 1255, 1366, 1518
HphI GGTGA 4 cut(s) 898, 1066, 1306, 1355
Hpy166II GTNNAC 4 cut(s) 136, 640, 1153, 1500
Hpy188I TCNGA 6 cut(s) 173, 334, 449, 839, 877, 1388
Hpy188III TCNNGA 6 cut(s) 356, 683, 967, 1121, 1222, 1339
Hpy8I GTNNAC 4 cut(s) 136, 640, 1153, 1500
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 7 cut(s) 124, 339, 742, 793, 994, 1170, 1549
HpyCH4III ACNGT 7 cut(s) 516, 700, 814, 923, 938, 1091, 1111
HpyCH4IV ACGT 2 cut(s) 507, 525
HpyCH4V TGCA 8 cut(s) 43, 259, 311, 406, 670, 1184, 1252, 1355
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 76, 325, 728, 839, 1358
HpyF3I CTNAG 5 cut(s) 183, 555, 848, 1260, 1379
HpySE526I ACGT 2 cut(s) 507, 525
Hsp92II CATG 5 cut(s) 142, 315, 327, 731, 1028
HspAI GCGC 3 cut(s) 8, 56, 574
Kpn2I TCCGGA 1 cut(s) 966
Kzo9I GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
LmnI GCTCC 5 cut(s) 15, 17, 223, 305, 703
Lsp1109I GCAGC 5 cut(s) 55, 102, 295, 943, 1339
LweI GCATC 2 cut(s) 529, 1321
MaeI CTAG 5 cut(s) 21, 683, 843, 1197, 1548
MaeII ACGT 2 cut(s) 507, 525
MaeIII GTNAC 3 cut(s) 518, 1072, 1312
MalI GATC 6 cut(s) 65, 341, 1031, 1201, 1385, 1452
MboI GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
MhlI GDGCHC 3 cut(s) 481, 561, 1413
MluCI AATT 6 cut(s) 144, 232, 261, 896, 1056, 1322
MlyI GAGTC 2 cut(s) 1389, 1416
MmeI TCCRAC 4 cut(s) 173, 574, 1168, 1399
MroI TCCGGA 1 cut(s) 966
MroXI GAANNNNTTC 1 cut(s) 1472
MseI TTAA 3 cut(s) 381, 656, 989
MslI CAYNNNNRTG 1 cut(s) 812
MspA1I CMGCKG 3 cut(s) 73, 755, 1352
MspI CCGG 4 cut(s) 967, 1255, 1366, 1518
MspR9I CCNGG 1 cut(s) 1519
Mva1269I GAATGC 1 cut(s) 672
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 6 cut(s) 40, 76, 325, 728, 839, 1358
NciI CCSGG 1 cut(s) 1519
NdeII GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
NheI GCTAGC 1 cut(s) 20
NlaIII CATG 5 cut(s) 142, 315, 327, 731, 1028
NlaIV GGNNCC 2 cut(s) 1119, 1537
NmuCI GTSAC 3 cut(s) 518, 1072, 1312
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 812
PceI AGGCCT 1 cut(s) 1278
PctI GAATGC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 1472
PfeI GAWTC 3 cut(s) 362, 768, 1225
PflFI GACNNNGTC 1 cut(s) 524
PkrI GCNGC 6 cut(s) 45, 72, 117, 310, 933, 1354
PleI GAGTC 2 cut(s) 1389, 1416
PpsI GAGTC 2 cut(s) 1389, 1416
Psp124BI GAGCTC 1 cut(s) 1413
PspN4I GGNNCC 2 cut(s) 1119, 1537
PspPI GGNCC 3 cut(s) 775, 802, 950
PsrI GAACNNNNNNTAC 2 cut(s) 336, 368
PsyI GACNNNGTC 1 cut(s) 524
PvuII CAGCTG 2 cut(s) 755, 1352
RsaI GTAC 5 cut(s) 137, 272, 440, 467, 907
RsaNI GTAC 5 cut(s) 136, 271, 439, 466, 906
RseI CAYNNNNRTG 1 cut(s) 812
SacI GAGCTC 1 cut(s) 1413
SaqAI TTAA 3 cut(s) 381, 656, 989
SatI GCNGC 6 cut(s) 44, 71, 116, 309, 932, 1353
Sau3AI GATC 6 cut(s) 63, 339, 1029, 1199, 1383, 1450
Sau96I GGNCC 3 cut(s) 775, 802, 950
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 2 cut(s) 1389, 1416
ScrFI CCNGG 1 cut(s) 1519
SduI GDGCHC 3 cut(s) 481, 561, 1413
SfaNI GCATC 2 cut(s) 529, 1321
SfcI CTRYAG 1 cut(s) 1033
SinI GGWCC 2 cut(s) 802, 950
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 3 cut(s) 881, 1337, 1406
SmoI CTYRAG 3 cut(s) 881, 1337, 1406
Sse9I AATT 6 cut(s) 144, 232, 261, 896, 1056, 1322
SseBI AGGCCT 1 cut(s) 1278
SsiI CCGC 4 cut(s) 71, 92, 805, 1471
SspMI CTAG 5 cut(s) 21, 683, 843, 1197, 1548
SstI GAGCTC 1 cut(s) 1413
StuI AGGCCT 1 cut(s) 1278
StyD4I CCNGG 1 cut(s) 1517
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 7 cut(s) 516, 700, 814, 923, 938, 1091, 1111
TaiI ACGT 2 cut(s) 510, 528
TaqI TCGA 1 cut(s) 1375
TasI AATT 6 cut(s) 144, 232, 261, 896, 1056, 1322
TatI WGTACW 3 cut(s) 135, 270, 905
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 3 cut(s) 362, 768, 1225
Tru1I TTAA 3 cut(s) 381, 656, 989
Tru9I TTAA 3 cut(s) 381, 656, 989
TscAI CASTG 5 cut(s) 66, 521, 705, 819, 1507
TseFI GTSAC 3 cut(s) 518, 1072, 1312
TseI GCWGC 5 cut(s) 43, 115, 308, 931, 1352
Tsp45I GTSAC 3 cut(s) 518, 1072, 1312
TspDTI ATGAA 9 cut(s) 291, 312, 509, 909, 1013, 1317, 1468, 1501, 1531
TspRI CASTG 5 cut(s) 66, 521, 705, 819, 1507
Tth111I GACNNNGTC 1 cut(s) 524
VpaK11BI GGWCC 2 cut(s) 802, 950
XagI CCTNNNNNAGG 1 cut(s) 782
XapI RAATTY 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 1152
XmnI GAANNNNTTC 1 cut(s) 1472
XspI CTAG 5 cut(s) 21, 683, 843, 1197, 1548
ZrmI AGTACT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.