RchiOBHm_Chr1g0338891

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003477
Physical Location & Seq
Reverse (-)
30049309 .. 30053255
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 504 bp
ATGACCCCTTTGTTGTGGCCACGCCAGGATGAAGTTATGAGGCGATTTAATCTTAATGATGCTGGGGCACCAGCTCAAACTGTTTCTGATTTGAATTTGCCACGAATGGCCCCGTTTCCCTTCTACGGGATGATGGTACTCCTGAGAATATGTCATGCACCAGGAAATAGAGTAGCTGTCATTAACCTCAAGTTGCAAGATTATAGCAGGACTCCGTCAGCAGAATCAGAGGTTAAGTTTCAGCTCTCAAGGGTTTCATTGGAGCCAATGTTGAGGTCTATGGCCTACATTAGTGATCAGCTCTCAACACCAGCTAATAAGGTCGCTGTTATAAATTTAAAGCTTCAAGACACAGAGACAACTACAGGGGAGTCAGAGGTTAAGTTTCAAGTGTCTAGGGATACATTAGGTGCCATGCTACGATCAATGGCCTATATCCGCGAGCAGCTTTCAACCGCTGGCGAGGTCCATTCAGATTCCCAACCTAAAAAGCAGCGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

167

Amino Acids

18.81

Weight (kDa)

9.37

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
AccB1I GGYRCC 2 cut(s) 67, 410
AccII CGCG 1 cut(s) 441
AciI CCGC 3 cut(s) 439, 456, 496
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 2 cut(s) 94, 334
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 125, 126
AgsI TTSAA 4 cut(s) 94, 347, 389, 453
AjnI CCWGG 2 cut(s) 24, 160
AluBI AGCT 7 cut(s) 74, 176, 244, 301, 314, 343, 448
AluI AGCT 7 cut(s) 74, 176, 244, 301, 314, 343, 448
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 4 cut(s) 17, 108, 282, 429
ApeKI GCWGC 2 cut(s) 445, 493
ApoI RAATTY 2 cut(s) 94, 334
AspS9I GGNCC 2 cut(s) 109, 466
AvaII GGWCC 1 cut(s) 466
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 19
BanI GGYRCC 2 cut(s) 67, 410
BbvI GCAGC 1 cut(s) 457
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 26, 162
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 363
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 2 cut(s) 446, 494
BlsI GCNGC 2 cut(s) 447, 495
Bme1390I CCNGG 2 cut(s) 26, 162
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 2 cut(s) 109, 466
BmiI GGNNCC 4 cut(s) 69, 111, 264, 412
BmrFI CCNGG 2 cut(s) 26, 162
BmsI GCATC 1 cut(s) 49
BpuEI CTTGAG 2 cut(s) 173, 232
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 126
BseBI CCWGG 2 cut(s) 26, 162
BseGI GGATG 2 cut(s) 34, 135
BseLI CCNNNNNNNGG 2 cut(s) 125, 126
BseMII CTCAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 457
BseYI CCCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 4 cut(s) 19, 110, 284, 431
BshNI GGYRCC 2 cut(s) 67, 410
BslI CCNNNNNNNGG 2 cut(s) 125, 126
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 4 cut(s) 19, 110, 284, 431
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 295, 422
BspACI CCGC 3 cut(s) 439, 456, 496
BspANI GGCC 4 cut(s) 19, 110, 284, 431
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 4 cut(s) 69, 111, 264, 412
BspT107I GGYRCC 2 cut(s) 67, 410
BssMI GATC 2 cut(s) 295, 422
Bst2UI CCWGG 2 cut(s) 26, 162
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 443, 460
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 2 cut(s) 34, 135
BstFNI CGCG 1 cut(s) 441
BstKTI GATC 2 cut(s) 298, 425
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 2 cut(s) 295, 422
BstNI CCWGG 2 cut(s) 26, 162
BstSCI CCNGG 2 cut(s) 24, 160
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 457
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 19, 110, 284, 431
BtsCI GGATG 2 cut(s) 34, 135
Cac8I GCNNGC 2 cut(s) 443, 460
Cfr13I GGNCC 2 cut(s) 109, 466
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 155, 415
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 143
DpnI GATC 2 cut(s) 297, 424
DpnII GATC 2 cut(s) 295, 422
DraI TTTAAA 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 466
EcoRII CCWGG 2 cut(s) 24, 160
FaeI CATG 2 cut(s) 158, 418
FaiI YATR 8 cut(s) 38, 151, 156, 204, 281, 332, 416, 435
FatI CATG 2 cut(s) 154, 414
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 446, 494
FokI GGATG 2 cut(s) 41, 142
Fsp4HI GCNGC 2 cut(s) 446, 494
FspBI CTAG 1 cut(s) 396
GluI GCNGC 2 cut(s) 446, 494
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 4 cut(s) 19, 110, 284, 431
Hin1II CATG 2 cut(s) 158, 418
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 4 cut(s) 211, 224, 371, 476
Hpy188I TCNGA 4 cut(s) 88, 229, 376, 475
Hpy188III TCNNGA 2 cut(s) 142, 347
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 158, 196
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 158, 418
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 295, 422
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 396
MalI GATC 2 cut(s) 297, 424
MboI GATC 2 cut(s) 295, 422
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 2 cut(s) 94, 334
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 2 cut(s) 205, 380
MnlI CCTC 6 cut(s) 33, 197, 223, 267, 370, 457
Mox20I TGGCCA 1 cut(s) 19
MscI TGGCCA 1 cut(s) 19
MseI TTAA 6 cut(s) 48, 54, 183, 234, 338, 381
Msp20I TGGCCA 1 cut(s) 19
MspA1I CMGCKG 2 cut(s) 458, 496
MspR9I CCNGG 2 cut(s) 26, 162
MvaI CCWGG 2 cut(s) 26, 162
MvnI CGCG 1 cut(s) 441
NdeII GATC 2 cut(s) 295, 422
NlaIII CATG 2 cut(s) 158, 418
NlaIV GGNNCC 4 cut(s) 69, 111, 264, 412
PfeI GAWTC 2 cut(s) 224, 476
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 2 cut(s) 447, 495
PleI GAGTC 2 cut(s) 205, 379
PpsI GAGTC 2 cut(s) 205, 379
PsiI TTATAA 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 24, 160
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 2 cut(s) 24, 160
PspN4I GGNNCC 4 cut(s) 69, 111, 264, 412
PspPI GGNCC 2 cut(s) 109, 466
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 6 cut(s) 48, 54, 183, 234, 338, 381
SatI GCNGC 2 cut(s) 446, 494
Sau3AI GATC 2 cut(s) 295, 422
Sau96I GGNCC 2 cut(s) 109, 466
SchI GAGTC 2 cut(s) 205, 380
ScrFI CCNGG 2 cut(s) 26, 162
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 466
SmlI CTYRAG 2 cut(s) 188, 247
SmoI CTYRAG 2 cut(s) 188, 247
Sse9I AATT 2 cut(s) 94, 334
SsiI CCGC 3 cut(s) 439, 456, 496
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 24, 160
TaaI ACNGT 1 cut(s) 82
TasI AATT 2 cut(s) 94, 334
TfiI GAWTC 2 cut(s) 224, 476
Tru1I TTAA 6 cut(s) 48, 54, 183, 234, 338, 381
Tru9I TTAA 6 cut(s) 48, 54, 183, 234, 338, 381
TseI GCWGC 2 cut(s) 445, 493
TspDTI ATGAA 2 cut(s) 45, 246
TspGWI ACGGA 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 2 cut(s) 94, 334
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.