RchiOBHm_Chr1g0348451

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
41324796 .. 41333138
8343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1398 bp
ATGACGTGGAAAGAGACAGAATGGCTAAATTCCTATAATACGCTTGTCAACATTTTCCCACTCGATGTCTTTACAATGAGTGGAAAATGTTGGAAGGGGAAGGTAGATGGAAAATGTTACACTATAAATCATCGGGCCTTTACTCGTTTAGTAGAATTTCGAAAGCAAATGATGCAGAGGCTCAAGGTAGCTGTATTGGCCAGACATGGCGGCCTTGACAGTTGTCGTTTCCTCCGCCATTGCAGCAGAAGAGGGCTCTGCTCTCTCCCGGACACTGCCCTCAACGATGATCTTGATAACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGACCTTCTGTGCTCAATGCTCTCACTACTGCAATGGGGCTTAGATTGCAGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACGAAGGGAGAATGGAAGATTGTAAGGAGTTTTTTAGGGCATTATATCCTTTTATGTATCTCCTGGGCACGTGTTTAAAGCCACATGTGGCTATCTTGAATGGTGTTACCATGGGTGGCGGTGGTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACTGTTTTTGCTACCCCTGAAACTCTAATTGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCCGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAAACTTGTTTAGACAAACATGGGGAACTTGTCCATCCAAATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGACACAGTTGAAGAGATTATAGATGCCTTGGAAATTGAGGCAGGCAGAACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCGCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTACCGAATGTCCTTACAGGGACTTTCTAAGCAGATTACGGGTGACTTCTGTGAGGGGGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCTAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTTGAGCCTGACTTAGAACTTCCAACAGAGTCGCGAGAAGCATTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

52.16

Weight (kDa)

6.19

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 111 - 444 4.7e-118 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 115 - 278 1.6e-21 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 307, 725
AccII CGCG 1 cut(s) 1381
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 5 cut(s) 210, 235, 476, 630, 661
AclWI GGATC 6 cut(s) 893, 1055, 1068, 1277, 1290, 1329
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 28, 155
AcvI CACGTG 1 cut(s) 582
AfaI GTAC 2 cut(s) 407, 1184
AfiI CCNNNNNNNGG 5 cut(s) 307, 434, 725, 1278, 1279
AflIII ACRYGT 2 cut(s) 581, 595
AgsI TTSAA 9 cut(s) 314, 451, 610, 852, 914, 980, 1016, 1117, 1298
AhlI ACTAGT 1 cut(s) 1252
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 2 cut(s) 573, 649
AjuI GAANNNNNNNTTGG 4 cut(s) 690, 722, 861, 893
AloI GAACNNNNNNTCC 2 cut(s) 1045, 1077
AluBI AGCT 3 cut(s) 191, 323, 1113
AluI AGCT 3 cut(s) 191, 323, 1113
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 5 cut(s) 8, 498, 646, 1081, 1105
AlwI GGATC 6 cut(s) 893, 1055, 1068, 1277, 1290, 1329
AlwNI CAGNNNCTG 2 cut(s) 403, 725
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 3 cut(s) 135, 198, 211
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 2 cut(s) 28, 155
AseI ATTAAT 1 cut(s) 863
AspS9I GGNCC 4 cut(s) 135, 327, 803, 1174
AsuC2I CCSGG 2 cut(s) 269, 756
AsuHPI GGTGA 1 cut(s) 1235
AsuII TTCGAA 1 cut(s) 160
AvaII GGWCC 3 cut(s) 327, 803, 1174
BaeGI GKGCMC 2 cut(s) 581, 1249
BalI TGGCCA 1 cut(s) 200
BamHI GGATCC 2 cut(s) 1060, 1282
BanII GRGCYC 1 cut(s) 258
BbrPI CACGTG 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 101, 723, 954
BciT130I CCWGG 2 cut(s) 575, 651
BclI TGATCA 1 cut(s) 1162
BcnI CCSGG 2 cut(s) 269, 756
BcoDI GTCTC 5 cut(s) 8, 498, 646, 1081, 1105
BcuI ACTAGT 1 cut(s) 1252
BfaI CTAG 2 cut(s) 1253, 1290
BfmI CTRYAG 1 cut(s) 336
BglII AGATCT 1 cut(s) 1130
BisI GCNGC 2 cut(s) 211, 244
BlsI GCNGC 2 cut(s) 212, 245
Bme1390I CCNGG 4 cut(s) 269, 575, 651, 756
Bme18I GGWCC 3 cut(s) 327, 803, 1174
BmgBI CACGTC 1 cut(s) 6
BmgT120I GGNCC 4 cut(s) 135, 327, 803, 1174
BmiI GGNNCC 2 cut(s) 1062, 1284
BmrFI CCNGG 4 cut(s) 269, 575, 651, 756
BmsI GCATC 5 cut(s) 162, 712, 740, 801, 1018
BoxI GACNNNNGTC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 269, 756
BsaAI YACGTR 1 cut(s) 582
BsaJI CCNNGG 5 cut(s) 574, 621, 649, 1032, 1064
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 434, 725, 1278, 1279
Bse3DI GCAATG 3 cut(s) 238, 387, 663
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 2 cut(s) 575, 651
BseDI CCNNGG 5 cut(s) 574, 621, 649, 1032, 1064
BseGI GGATG 4 cut(s) 436, 715, 731, 946
BseLI CCNNNNNNNGG 5 cut(s) 307, 434, 725, 1278, 1279
BseMI GCAATG 3 cut(s) 238, 387, 663
BseMII CTCAG 2 cut(s) 798, 1281
BseSI GKGCMC 2 cut(s) 581, 1249
BseXI GCAGC 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 1381
BshFI GGCC 3 cut(s) 137, 200, 213
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 269, 428, 756
BslFI GGGAC 2 cut(s) 1215, 1319
BslI CCNNNNNNNGG 5 cut(s) 307, 434, 725, 1278, 1279
BsmAI GTCTC 5 cut(s) 8, 498, 646, 1081, 1105
BsmFI GGGAC 2 cut(s) 1215, 1319
BsmI GAATGC 1 cut(s) 1388
BsnI GGCC 3 cut(s) 137, 200, 213
Bsp119I TTCGAA 1 cut(s) 160
Bsp1286I GDGCHC 4 cut(s) 258, 363, 581, 1249
Bsp13I TCCGGA 1 cut(s) 427
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
Bsp19I CCATGG 2 cut(s) 621, 1064
Bsp68I TCGCGA 1 cut(s) 1381
BspACI CCGC 5 cut(s) 210, 235, 476, 630, 661
BspANI GGCC 3 cut(s) 137, 200, 213
BspCNI CTCAG 2 cut(s) 799, 1280
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 1381
BspLI GGNNCC 2 cut(s) 1062, 1284
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 6 cut(s) 893, 1055, 1068, 1277, 1290, 1329
BspT104I TTCGAA 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 238, 387, 663
BsrGI TGTACA 1 cut(s) 405
BssECI CCNNGG 5 cut(s) 574, 621, 649, 1032, 1064
BssMI GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
BssT1I CCWWGG 3 cut(s) 621, 1032, 1064
Bst2UI CCWGG 2 cut(s) 575, 651
Bst4CI ACNGT 4 cut(s) 221, 405, 682, 1012
Bst6I CTCTTC 2 cut(s) 244, 1011
BstAPI GCANNNNNTGC 2 cut(s) 172, 473
BstAUI TGTACA 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 582
BstBI TTCGAA 1 cut(s) 160
BstC8I GCNNGC 3 cut(s) 816, 828, 1048
BstDEI CTNAG 8 cut(s) 389, 763, 807, 1127, 1209, 1267, 1340, 1360
BstDSI CCRYGG 2 cut(s) 621, 1064
BstF5I GGATG 4 cut(s) 436, 715, 731, 946
BstFNI CGCG 1 cut(s) 1381
BstKTI GATC 7 cut(s) 292, 901, 1063, 1133, 1165, 1285, 1324
BstMAI GTCTC 5 cut(s) 8, 498, 646, 1081, 1105
BstMBI GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
BstMWI GCNNNNNNNGC 5 cut(s) 172, 197, 243, 394, 473
BstNI CCWGG 2 cut(s) 575, 651
BstNSI RCATGY 1 cut(s) 599
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 4 cut(s) 267, 573, 649, 754
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 2 cut(s) 581, 1249
BstUI CGCG 1 cut(s) 1381
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 3 cut(s) 1060, 1130, 1282
BstXI CCANNNNNNTGG 1 cut(s) 1315
BstYI RGATCY 3 cut(s) 1060, 1130, 1282
BsuRI GGCC 3 cut(s) 137, 200, 213
BtgI CCRYGG 2 cut(s) 621, 1064
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 4 cut(s) 436, 715, 731, 946
BtsI GCAGTG 2 cut(s) 273, 463
BtsIMutI CAGTG 4 cut(s) 273, 463, 891, 1172
BtuMI TCGCGA 1 cut(s) 1381
Cac8I GCNNGC 3 cut(s) 816, 828, 1048
CaiI CAGNNNCTG 2 cut(s) 403, 725
Cfr13I GGNCC 4 cut(s) 135, 327, 803, 1174
Csp6I GTAC 2 cut(s) 406, 1183
CviAII CATG 7 cut(s) 206, 596, 622, 932, 1004, 1065, 1315
CviQI GTAC 2 cut(s) 406, 1183
DdeI CTNAG 8 cut(s) 389, 763, 807, 1127, 1209, 1267, 1340, 1360
DpnI GATC 7 cut(s) 291, 900, 1062, 1132, 1164, 1284, 1323
DpnII GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
DraI TTTAAA 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 244, 1011
EarI CTCTTC 2 cut(s) 244, 1011
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 3 cut(s) 621, 1032, 1064
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 3 cut(s) 327, 803, 1174
Eco72I CACGTG 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 573, 649
EcoT14I CCWWGG 3 cut(s) 621, 1032, 1064
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 3 cut(s) 621, 1032, 1064
FaeI CATG 7 cut(s) 209, 599, 625, 935, 1007, 1068, 1318
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 2 cut(s) 1215, 1319
FatI CATG 7 cut(s) 205, 595, 621, 931, 1003, 1064, 1314
FauI CCCGC 1 cut(s) 469
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 2 cut(s) 211, 244
FokI GGATG 4 cut(s) 443, 702, 718, 933
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 211, 244
FspBI CTAG 2 cut(s) 1253, 1290
GluI GCNGC 2 cut(s) 211, 244
GsaI CCCAGC 1 cut(s) 729
HaeIII GGCC 3 cut(s) 137, 200, 213
HapII CCGG 3 cut(s) 269, 428, 756
Hin1II CATG 7 cut(s) 209, 599, 625, 935, 1007, 1068, 1318
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 3 cut(s) 856, 1265, 1376
HpaII CCGG 3 cut(s) 269, 428, 756
HphI GGTGA 1 cut(s) 1235
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 1155, 1397
Hpy188III TCNNGA 6 cut(s) 293, 330, 428, 607, 719, 1380
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 9 cut(s) 88, 94, 308, 363, 445, 509, 912, 1111, 1136
HpyCH4III ACNGT 4 cut(s) 221, 405, 682, 1012
HpyCH4IV ACGT 2 cut(s) 5, 581
HpyCH4V TGCA 9 cut(s) 175, 243, 338, 380, 397, 446, 668, 844, 1071
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 197, 243, 394, 473
HpyF3I CTNAG 8 cut(s) 389, 763, 807, 1127, 1209, 1267, 1340, 1360
HpySE526I ACGT 2 cut(s) 5, 581
Hsp92II CATG 7 cut(s) 209, 599, 625, 935, 1007, 1068, 1318
Kpn2I TCCGGA 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 5 cut(s) 162, 712, 740, 801, 1018
MaeI CTAG 2 cut(s) 1253, 1290
MaeII ACGT 2 cut(s) 5, 581
MaeIII GTNAC 6 cut(s) 116, 616, 758, 889, 1223, 1303
MalI GATC 7 cut(s) 291, 900, 1062, 1132, 1164, 1284, 1323
MboI GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
MboII GAAGA 7 cut(s) 261, 431, 539, 881, 884, 1028, 1158
MflI RGATCY 3 cut(s) 1060, 1130, 1282
MhlI GDGCHC 4 cut(s) 258, 363, 581, 1249
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 5 cut(s) 28, 155, 705, 980, 1038
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 1259, 1385
MmeI TCCRAC 2 cut(s) 71, 1394
MnlI CCTC 8 cut(s) 171, 242, 245, 290, 1036, 1228, 1296, 1347
Mox20I TGGCCA 1 cut(s) 200
MroI TCCGGA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 200
MseI TTAA 3 cut(s) 587, 863, 1092
MslI CAYNNNNRTG 1 cut(s) 720
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 3 cut(s) 269, 428, 756
MspR9I CCNGG 4 cut(s) 269, 575, 651, 756
Mva1269I GAATGC 1 cut(s) 1388
MvaI CCWGG 2 cut(s) 575, 651
MvnI CGCG 1 cut(s) 1381
MwoI GCNNNNNNNGC 5 cut(s) 172, 197, 243, 394, 473
NciI CCSGG 2 cut(s) 269, 756
NcoI CCATGG 2 cut(s) 621, 1064
NdeII GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
NlaIII CATG 7 cut(s) 209, 599, 625, 935, 1007, 1068, 1318
NlaIV GGNNCC 2 cut(s) 1062, 1284
NmuCI GTSAC 3 cut(s) 758, 889, 1223
NruI TCGCGA 1 cut(s) 1381
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 1 cut(s) 160
PciI ACATGT 1 cut(s) 595
PctI GAATGC 1 cut(s) 1388
PfeI GAWTC 1 cut(s) 856
PflMI CCANNNNNTGG 2 cut(s) 307, 725
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 2 cut(s) 212, 245
PleI GAGTC 2 cut(s) 1259, 1384
PmaCI CACGTG 1 cut(s) 582
PmlI CACGTG 1 cut(s) 582
PpsI GAGTC 2 cut(s) 1259, 1384
Ppu21I YACGTR 1 cut(s) 582
PscI ACATGT 1 cut(s) 595
PshAI GACNNNNGTC 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 573, 649
PspCI CACGTG 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 2 cut(s) 573, 649
PspN4I GGNNCC 2 cut(s) 1062, 1284
PspPI GGNCC 4 cut(s) 135, 327, 803, 1174
PstI CTGCAG 1 cut(s) 340
PstNI CAGNNNCTG 2 cut(s) 403, 725
PsuI RGATCY 3 cut(s) 1060, 1130, 1282
RruI TCGCGA 1 cut(s) 1381
RsaI GTAC 2 cut(s) 407, 1184
RsaNI GTAC 2 cut(s) 406, 1183
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 3 cut(s) 587, 863, 1092
SatI GCNGC 2 cut(s) 211, 244
Sau3AI GATC 7 cut(s) 289, 898, 1060, 1130, 1162, 1282, 1321
Sau96I GGNCC 4 cut(s) 135, 327, 803, 1174
SchI GAGTC 2 cut(s) 1259, 1385
ScrFI CCNGG 4 cut(s) 269, 575, 651, 756
SduI GDGCHC 4 cut(s) 258, 363, 581, 1249
SfaNI GCATC 5 cut(s) 162, 712, 740, 801, 1018
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 160
SinI GGWCC 3 cut(s) 327, 803, 1174
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SpeI ACTAGT 1 cut(s) 1252
Sse9I AATT 5 cut(s) 28, 155, 705, 980, 1038
SsiI CCGC 5 cut(s) 210, 235, 476, 630, 661
SspI AATATT 1 cut(s) 1328
SspMI CTAG 2 cut(s) 1253, 1290
StyD4I CCNGG 4 cut(s) 267, 573, 649, 754
StyI CCWWGG 3 cut(s) 621, 1032, 1064
TaaI ACNGT 4 cut(s) 221, 405, 682, 1012
TaiI ACGT 2 cut(s) 8, 584
TaqI TCGA 4 cut(s) 63, 160, 867, 1257
TasI AATT 5 cut(s) 28, 155, 705, 980, 1038
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 856
Tru1I TTAA 3 cut(s) 587, 863, 1092
Tru9I TTAA 3 cut(s) 587, 863, 1092
TscAI CASTG 4 cut(s) 280, 463, 898, 1172
TseFI GTSAC 3 cut(s) 758, 889, 1223
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 3 cut(s) 758, 889, 1223
TspDTI ATGAA 2 cut(s) 1005, 1381
TspGWI ACGGA 1 cut(s) 1166
TspRI CASTG 4 cut(s) 280, 463, 898, 1172
Van91I CCANNNNNTGG 2 cut(s) 307, 725
VpaK11BI GGWCC 3 cut(s) 327, 803, 1174
VspI ATTAAT 1 cut(s) 863
XapI RAATTY 2 cut(s) 28, 155
XceI RCATGY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 2 cut(s) 722, 1315
XspI CTAG 2 cut(s) 1253, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.