RchiOBHm_Chr1g0350551

Glutathione S-transferase zeta class-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007528
Physical Location & Seq
Reverse (-)
43698699 .. 43704085
5387 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
ATGAAATTCTACCACAATCCCAGTCATCTTCACTCCTTAGTCTCCTCCATCATCAAAAGCTCCAAGAGAACCCAGTTGAACAACTTCACCAGGTGCTTCACTACTCGTGTCGGGTTCGAGAGTCCACGCACAAGTCGACCCATGGAAAATACAGAAGCTTCGTATTCATCTTCTTCAAAGCTGGTGCTCTATTCCTACTGGCAGAGTTCATGCTCTTGGCGAGTTCGCTTCGCTCTAAACCTTAAAGGCCTTTCATATGAGTACAAACCGGTGAACCTAGCAAAAGGAGAGCAGTTTAATCCAGACTTTGAGCGTCTGAATCCTCTGCATTATGTTCCGGTGTTGGTTGATGGTGACACCGTGATTTCGGACTCCTATGCAATATTTCTGTATCTGGAGGAGAAGTACCCGCAGAGACCGTTATTGCCTGCTGACCCTCGGCTAAAAGCTCTTAACCTCCAGGGTGCAAGCATTATCAGCTCTAGTATACAGCCTCTCCACATGCTATCAATGCTGAAGTACATTGAGGAAAAGATTGGTCCTGAAGAGAGCCTGTCATGGGCTCAATTGCATATAGAAAAAGGTTTCTGTGCACTTGAGAAGTTGCTGAAGGATTTTGCTAGCAGATTTGCCACAGGAAATGAAGTGTATATGACTGACGTGTTCTTAGCACCGCAGATTGCTATAGCTACAGCAAGGTTCAATATAAATATGTCCACATTCCCCAGTTTAAGTAGGGTGAATGAATCATACAAGGGTCTACCAGAGTTCCAAGCTTCATCACCGGAAAGGCAACCTGATGCTGTGCATGGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120
Pfam Domains
Protein Families
GST_C_2 GST_C_3 GST_N_2 GST_N_3

Protein Analysis

272

Amino Acids

30.96

Weight (kDa)

8.63

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 60 - 133 1e-16 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 63 - 140 5.7e-18 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 69 - 134 5.4e-18 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 136, 487, 760
AciI CCGC 2 cut(s) 410, 674
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 3 cut(s) 536, 564, 629
AdeI CACNNNGTG 1 cut(s) 93
AfaI GTAC 3 cut(s) 263, 407, 521
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 660
AgeI ACCGGT 1 cut(s) 268
AgsI TTSAA 3 cut(s) 79, 177, 703
AjiI CACGTC 1 cut(s) 661
AjnI CCWGG 2 cut(s) 89, 459
AluBI AGCT 7 cut(s) 60, 158, 181, 449, 480, 689, 776
AluI AGCT 7 cut(s) 60, 158, 181, 449, 480, 689, 776
Alw21I GWGCWC 2 cut(s) 189, 595
Alw26I GTCTC 2 cut(s) 46, 409
Alw44I GTGCAC 1 cut(s) 591
AoxI GGCC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 591
ApoI RAATTY 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 539
AsuHPI GGTGA 5 cut(s) 79, 283, 365, 751, 774
AsuNHI GCTAGC 1 cut(s) 620
AvaII GGWCC 1 cut(s) 539
BaeGI GKGCMC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 565
BauI CACGAG 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 189, 595
BccI CCATC 2 cut(s) 56, 344
BciT130I CCWGG 2 cut(s) 91, 461
BcoDI GTCTC 2 cut(s) 46, 409
BfaI CTAG 3 cut(s) 278, 483, 621
BfmI CTRYAG 2 cut(s) 684, 690
Bme1390I CCNGG 2 cut(s) 91, 461
Bme18I GGWCC 1 cut(s) 539
BmgBI CACGTC 1 cut(s) 661
BmgT120I GGNCC 1 cut(s) 539
BmrFI CCNGG 2 cut(s) 91, 461
BmrI ACTGGG 3 cut(s) 15, 67, 720
BmsI GCATC 1 cut(s) 790
BmtI GCTAGC 1 cut(s) 624
BmuI ACTGGG 3 cut(s) 15, 67, 720
BpmI CTGGAG 2 cut(s) 416, 443
BpuEI CTTGAG 1 cut(s) 617
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 141, 437, 460
BsaWI WCCGGW 3 cut(s) 268, 337, 784
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 4 cut(s) 21, 73, 203, 726
BseBI CCWGG 2 cut(s) 91, 461
BseDI CCNNGG 3 cut(s) 141, 437, 460
BseLI CCNNNNNNNGG 1 cut(s) 559
BseNI ACTGG 4 cut(s) 21, 73, 203, 726
BseRI GAGGAG 2 cut(s) 34, 413
BseSI GKGCMC 1 cut(s) 595
BshFI GGCC 1 cut(s) 249
BshTI ACCGGT 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 189, 595
BsiSI CCGG 3 cut(s) 269, 338, 785
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 2 cut(s) 46, 409
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 3 cut(s) 189, 565, 595
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 2 cut(s) 410, 674
BspANI GGCC 1 cut(s) 249
BspOI GCTAGC 1 cut(s) 624
BspTNI GGTCTC 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 4 cut(s) 21, 73, 203, 726
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 141, 437, 460
BssNAI GTATAC 1 cut(s) 488
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 91, 461
Bst4CI ACNGT 2 cut(s) 361, 420
Bst6I CTCTTC 1 cut(s) 540
BstC8I GCNNGC 3 cut(s) 429, 469, 622
BstDEI CTNAG 2 cut(s) 37, 667
BstDSI CCRYGG 1 cut(s) 141
BstMAI GTCTC 2 cut(s) 46, 409
BstMWI GCNNNNNNNGC 2 cut(s) 477, 511
BstNI CCWGG 2 cut(s) 91, 461
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 89, 459
BstSFI CTRYAG 2 cut(s) 684, 690
BstSLI GKGCMC 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 488
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 661
Cac8I GCNNGC 3 cut(s) 429, 469, 622
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 539
CseI GACGC 1 cut(s) 302
CsiI ACCWGGT 1 cut(s) 89
Csp6I GTAC 3 cut(s) 262, 406, 520
CspAI ACCGGT 1 cut(s) 268
CviAII CATG 5 cut(s) 142, 210, 502, 558, 809
CviQI GTAC 3 cut(s) 262, 406, 520
DdeI CTNAG 2 cut(s) 37, 667
DraIII CACNNNGTG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 539
Eco57I CTGAAG 3 cut(s) 536, 564, 629
EcoRII CCWGG 2 cut(s) 89, 459
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 5 cut(s) 145, 213, 505, 561, 812
FatI CATG 5 cut(s) 141, 209, 501, 557, 808
FauI CCCGC 1 cut(s) 417
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 3 cut(s) 136, 487, 760
FriOI GRGCYC 1 cut(s) 565
FspBI CTAG 3 cut(s) 278, 483, 621
GsuI CTGGAG 2 cut(s) 416, 443
HaeIII GGCC 1 cut(s) 249
HapII CCGG 3 cut(s) 269, 338, 785
HgaI GACGC 1 cut(s) 302
Hin1II CATG 5 cut(s) 145, 213, 505, 561, 812
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HindIII AAGCTT 2 cut(s) 156, 774
HinfI GANTC 4 cut(s) 121, 319, 371, 746
HpaII CCGG 3 cut(s) 269, 338, 785
HphI GGTGA 5 cut(s) 79, 283, 365, 751, 774
Hpy166II GTNNAC 7 cut(s) 125, 137, 274, 488, 593, 717, 761
Hpy188I TCNGA 2 cut(s) 318, 370
Hpy188III TCNNGA 4 cut(s) 118, 302, 395, 542
Hpy8I GTNNAC 7 cut(s) 125, 137, 274, 488, 593, 717, 761
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 2 cut(s) 361, 420
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 6 cut(s) 328, 380, 467, 571, 593, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 477, 511
HpyF3I CTNAG 2 cut(s) 37, 667
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 5 cut(s) 145, 213, 505, 561, 812
LmnI GCTCC 1 cut(s) 65
LweI GCATC 1 cut(s) 790
MabI ACCWGGT 1 cut(s) 89
MaeI CTAG 3 cut(s) 278, 483, 621
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 4 cut(s) 20, 162, 165, 557
MfeI CAATTG 1 cut(s) 566
MhlI GDGCHC 3 cut(s) 189, 565, 595
MluCI AATT 2 cut(s) 5, 566
MlyI GAGTC 2 cut(s) 130, 365
MnlI CCTC 7 cut(s) 55, 333, 391, 447, 467, 504, 520
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 4 cut(s) 243, 297, 453, 731
MspI CCGG 3 cut(s) 269, 338, 785
MspR9I CCNGG 2 cut(s) 91, 461
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 2 cut(s) 91, 461
MwoI GCNNNNNNNGC 2 cut(s) 477, 511
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 256
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 5 cut(s) 145, 213, 505, 561, 812
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 505
PceI AGGCCT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 319, 746
PinAI ACCGGT 1 cut(s) 268
PleI GAGTC 2 cut(s) 129, 365
PpsI GAGTC 2 cut(s) 129, 365
Psp6I CCWGG 2 cut(s) 89, 459
PspGI CCWGG 2 cut(s) 89, 459
PspPI GGNCC 1 cut(s) 539
RsaI GTAC 3 cut(s) 263, 407, 521
RsaNI GTAC 3 cut(s) 262, 406, 520
SalI GTCGAC 1 cut(s) 135
SaqAI TTAA 4 cut(s) 243, 297, 453, 731
Sau96I GGNCC 1 cut(s) 539
SchI GAGTC 2 cut(s) 130, 365
ScrFI CCNGG 2 cut(s) 91, 461
SduI GDGCHC 3 cut(s) 189, 565, 595
SexAI ACCWGGT 1 cut(s) 89
SfaNI GCATC 1 cut(s) 790
SfcI CTRYAG 2 cut(s) 684, 690
SinI GGWCC 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 2 cut(s) 5, 566
SseBI AGGCCT 1 cut(s) 249
SsiI CCGC 2 cut(s) 410, 674
SspI AATATT 1 cut(s) 384
SspMI CTAG 3 cut(s) 278, 483, 621
StuI AGGCCT 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 89, 459
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 361, 420
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 117, 136
TasI AATT 2 cut(s) 5, 566
TatI WGTACW 2 cut(s) 261, 519
TfiI GAWTC 2 cut(s) 319, 746
Tru1I TTAA 4 cut(s) 243, 297, 453, 731
Tru9I TTAA 4 cut(s) 243, 297, 453, 731
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 7 cut(s) 17, 156, 198, 243, 657, 759, 768
VneI GTGCAC 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 505
XmiI GTMKAC 3 cut(s) 136, 487, 760
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 3 cut(s) 278, 483, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.