RchiOBHm_Chr1g0350561

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
43708059 .. 43712704
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1722 bp
ATGGCTTTCTGGGGAATTGAAGTGAAACCCGGAAAGCCTTTTACTCATAAACCTGATGACTCCAATGGACGGCTTCACATTTCAATGGCAACATTGGGGTTGGGGGCTGCAACCAAAAGAAGCATACTCCAGTGTAATGTAGGAAACAAGAGTCCGGTTTATCTATGTGCGTTGTATCCTGAGAAGATCGAGTGTTTGCAACTACATTTGGAATTTGACGAGGCTGATGAAGTCATGTTCTCAGTTCTTGGTCCTCGGAGTGTTCACCTGGCTGGTTACTATCTAGGTGGTCGTCGGCCTTACAATCCAGATGAGTCAGAATCCTTTGGAGAAGATATTGCTGACTCAGAGACACAGAGATCTGTTAACAGTGAAGACGAAAAGTATGATGACAGTTTTATTGATGATGATGATGATCTTGAAGTCTTCCCATCTACTCCTGCATCTGATGCTACAGATTCTGATTCTTGTTCTGAAGAGGAGTTTTTGGCTAAGAAGAAACCTCAGAAAGGGAAGGTGCGGCACAGACAACTTAGAAAGACGTACGTAATAAGTGATTCAGAAGTTGAAAGTGAAAATGGGGATGACGACAGTCACCCAATTTCCTCTTTGGTTATGACAAAATCATCCACTGTTGAGAATGCAATACAGGAAGTGGAAGAAAAAGTTGACACCAGCAACAAGAAGGCAGTGGATGATTTTGCTACTGAATCAATTAGACATGCTGATGATGTACTTGTAGATGGTCAGTTGAAGAGGCAATTGGACCAGCCAGTTGATCTGTCTTCTAAAGTAGACCTTGAAAATGGGGGAAAGCCAAAAAGAAAAAGGAAAGAACGGCTGCAGGAGGAGAAAACAGTTGAAGCTGATGTCCTTAATAAAGAGGATGAAGCCCAGAAAAACGAGGCAGAGGCTGAAAATAGAAACCAGAATGGACAACTGATGCCAGTAAACCATAGTGGAGCTGAAATGCCAGATAACTTATCTTTGCTTTCCGCGGAGGTTGGCCTTGGAAACAGTGATAAACCAAAGAAGAAAAAGAAGAAGCGGGTGGAGGAGAAAACAGCTGAGGTTATCTGTACTAACCCTGGTAATGATATAAAAGAGGATGAGGCAAAGGGTGACTTCTGCTTGGATCCACCACTCAAAAGTGAACAAAATCAGAAGTCAGCCAAGGATGAGAGTTTTGGCCATGACTCCCATAAACTTGTTGATGAACCTGATGAAAAGAAAGTCAAAAAGAAGAAGAAGAAGAAAAGCAAAACCCAATCACATGGAGAAACCCTGAACACAGATATAGCTCTCTTGTCAGTAGAAGAGAAGGTCACATCTCCCATGGAGAATGAGGCCAATTATGTCGATGCTAAATCATCTGAAGTTAGAACTGTCCCCAGTGGATTACACATTGAGGAGTTAGAAGCAGGAGAACCAAATGGCAAAGTTGCAACCTCTGGGAAAAAGATCACTGTTCATTATGTTGGCAAGTTGAAAGAGAATGGAGAAGTAGTTGACTCGTGTGATGGTGGTCCTCCATCTAAGTTCCGCTTAGGTCGGGGAAAAGTTATGGAGGGTTTGGATGCTGGTATTGATGGTATGCGAGTTGGTGGCAAACGAAGACTTGTTATCCCACCTTCAATGGCTTATGGGAGCAAAGGAGATGATAAAGATATACCACCAGACTCATGGCTGGTATACGATGTTGAGTTGGTGAAAGTTCACTGA

Protein Analysis

573

Amino Acids

63.33

Weight (kDa)

5.09

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 94 3.1e-23 Nucleoplasmin-like domain
FKBP_C PF00254 482 - 570 5.1e-28 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 795, 1692
AccII CGCG 1 cut(s) 998
AciI CCGC 5 cut(s) 520, 996, 998, 1048, 1543
AclWI GGATC 2 cut(s) 1130, 1143
AcoI YGGCCR 1 cut(s) 1189
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 495, 1395
AfaI GTAC 3 cut(s) 545, 735, 1081
AfiI CCNNNNNNNGG 2 cut(s) 69, 509
AgsI TTSAA 9 cut(s) 20, 84, 422, 569, 754, 803, 863, 1489, 1635
AjnI CCWGG 2 cut(s) 267, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 4 cut(s) 866, 965, 1067, 1301
AluI AGCT 4 cut(s) 866, 965, 1067, 1301
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 1130, 1143
AlwNI CAGNNNCTG 2 cut(s) 461, 914
AoxI GGCC 4 cut(s) 296, 1006, 1189, 1347
ApeKI GCWGC 2 cut(s) 107, 841
ApoI RAATTY 1 cut(s) 212
AspS9I GGNCC 3 cut(s) 251, 766, 1526
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 4 cut(s) 257, 587, 1133, 1720
AvaII GGWCC 3 cut(s) 251, 766, 1526
BalI TGGCCA 1 cut(s) 1191
BamHI GGATCC 1 cut(s) 1135
BauI CACGAG 1 cut(s) 1513
BbsI GAAGAC 4 cut(s) 381, 418, 777, 1621
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 94, 828
BccI CCATC 5 cut(s) 439, 737, 1514, 1540, 1583
BceAI ACGGC 2 cut(s) 86, 854
BciT130I CCWGG 2 cut(s) 269, 1089
BciVI GTATCC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 2 cut(s) 453, 842
BfuI GTATCC 1 cut(s) 186
BglII AGATCT 1 cut(s) 359
BisI GCNGC 3 cut(s) 108, 521, 842
BlsI GCNGC 3 cut(s) 109, 522, 843
Bme1390I CCNGG 3 cut(s) 30, 269, 1089
Bme18I GGWCC 3 cut(s) 251, 766, 1526
BmgT120I GGNCC 3 cut(s) 251, 766, 1526
BmiI GGNNCC 1 cut(s) 1137
BmrFI CCNGG 3 cut(s) 30, 269, 1089
BmrI ACTGGG 1 cut(s) 1386
BmsI GCATC 5 cut(s) 439, 452, 933, 1351, 1567
BmuI ACTGGG 1 cut(s) 1386
BoxI GACNNNNGTC 1 cut(s) 591
BpiI GAAGAC 4 cut(s) 381, 418, 777, 1621
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 2 cut(s) 1068, 1546
BpuMI CCSGG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 6 cut(s) 254, 996, 1009, 1087, 1173, 1335
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 1491, 1521
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 509
Bse1I ACTGG 4 cut(s) 130, 773, 947, 1392
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 2 cut(s) 269, 1089
BseDI CCNNGG 6 cut(s) 254, 996, 1009, 1087, 1173, 1335
BseGI GGATG 7 cut(s) 589, 626, 700, 892, 1114, 1183, 1582
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 69, 509
BseMII CTCAG 5 cut(s) 171, 255, 360, 518, 1059
BseNI ACTGG 4 cut(s) 130, 773, 947, 1392
BseRI GAGGAG 4 cut(s) 494, 863, 1070, 1424
BseXI GCAGC 2 cut(s) 94, 828
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 4 cut(s) 298, 1008, 1191, 1349
BsiSI CCGG 2 cut(s) 30, 155
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 1373
BslI CCNNNNNNNGG 2 cut(s) 69, 509
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 1373
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 4 cut(s) 298, 1008, 1191, 1349
Bsp143I GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
Bsp19I CCATGG 1 cut(s) 1335
BspACI CCGC 5 cut(s) 520, 996, 998, 1048, 1543
BspANI GGCC 4 cut(s) 298, 1008, 1191, 1349
BspCNI CTCAG 5 cut(s) 172, 254, 359, 517, 1060
BspFNI CGCG 1 cut(s) 998
BspLI GGNNCC 1 cut(s) 1137
BspMAI CTGCAG 1 cut(s) 846
BspPI GGATC 2 cut(s) 1130, 1143
BsrI ACTGG 4 cut(s) 130, 773, 947, 1392
BssECI CCNNGG 6 cut(s) 254, 996, 1009, 1087, 1173, 1335
BssMI GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
BssNAI GTATAC 1 cut(s) 1693
BssSI CACGAG 1 cut(s) 1513
BssT1I CCWWGG 3 cut(s) 1009, 1173, 1335
Bst1107I GTATAC 1 cut(s) 1693
Bst2BI CACGAG 1 cut(s) 1513
Bst2UI CCWGG 2 cut(s) 269, 1089
Bst4CI ACNGT 8 cut(s) 371, 395, 593, 634, 859, 1019, 1387, 1468
Bst6I CTCTTC 3 cut(s) 471, 749, 1311
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 547
BstDEI CTNAG 9 cut(s) 180, 241, 346, 492, 504, 533, 1068, 1536, 1546
BstDSI CCRYGG 2 cut(s) 996, 1335
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 7 cut(s) 589, 626, 700, 892, 1114, 1183, 1582
BstFNI CGCG 1 cut(s) 998
BstKTI GATC 6 cut(s) 189, 362, 418, 781, 1138, 1464
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 269, 1089
BstNSI RCATGY 1 cut(s) 725
BstPAI GACNNNNGTC 1 cut(s) 591
BstSCI CCNGG 3 cut(s) 28, 267, 1087
BstSFI CTRYAG 2 cut(s) 453, 842
BstSNI TACGTA 1 cut(s) 547
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 2 cut(s) 94, 828
BstV2I GAAGAC 4 cut(s) 381, 418, 777, 1621
BstX2I RGATCY 2 cut(s) 359, 1135
BstXI CCANNNNNNTGG 2 cut(s) 1274, 1683
BstYI RGATCY 2 cut(s) 359, 1135
BstZ17I GTATAC 1 cut(s) 1693
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 4 cut(s) 298, 1008, 1191, 1349
BtgI CCRYGG 2 cut(s) 996, 1335
BtsCI GGATG 7 cut(s) 589, 626, 700, 892, 1114, 1183, 1582
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 8 cut(s) 137, 376, 630, 696, 1024, 1399, 1464, 1717
CaiI CAGNNNCTG 2 cut(s) 461, 914
Cfr13I GGNCC 3 cut(s) 251, 766, 1526
Cfr42I CCGCGG 1 cut(s) 999
Csp6I GTAC 3 cut(s) 544, 734, 1080
CviAII CATG 6 cut(s) 235, 722, 1193, 1274, 1336, 1683
CviQI GTAC 3 cut(s) 544, 734, 1080
DdeI CTNAG 9 cut(s) 180, 241, 346, 492, 504, 533, 1068, 1536, 1546
DpnI GATC 6 cut(s) 188, 361, 417, 780, 1137, 1463
DpnII GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
EaeI YGGCCR 1 cut(s) 1189
Eam1104I CTCTTC 3 cut(s) 471, 749, 1311
EarI CTCTTC 3 cut(s) 471, 749, 1311
Eco105I TACGTA 1 cut(s) 547
Eco130I CCWWGG 3 cut(s) 1009, 1173, 1335
Eco47I GGWCC 3 cut(s) 251, 766, 1526
Eco57I CTGAAG 2 cut(s) 495, 1395
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 267, 1087
EcoT14I CCWWGG 3 cut(s) 1009, 1173, 1335
ErhI CCWWGG 3 cut(s) 1009, 1173, 1335
FaeI CATG 6 cut(s) 238, 725, 1196, 1277, 1339, 1686
FalI AAGNNNNNCTT 6 cut(s) 783, 815, 1109, 1141, 1529, 1561
FaqI GGGAC 1 cut(s) 1373
FatI CATG 6 cut(s) 234, 721, 1192, 1273, 1335, 1682
FauI CCCGC 1 cut(s) 1041
FblI GTMKAC 2 cut(s) 795, 1692
Fnu4HI GCNGC 3 cut(s) 108, 521, 842
FokI GGATG 7 cut(s) 596, 613, 707, 899, 1121, 1190, 1589
Fsp4HI GCNGC 3 cut(s) 108, 521, 842
FspBI CTAG 1 cut(s) 284
GluI GCNGC 3 cut(s) 108, 521, 842
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 4 cut(s) 298, 1008, 1191, 1349
HapII CCGG 2 cut(s) 30, 155
Hin1II CATG 6 cut(s) 238, 725, 1196, 1277, 1339, 1686
HincII GTYRAC 3 cut(s) 367, 670, 1510
HindII GTYRAC 3 cut(s) 367, 670, 1510
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 2 cut(s) 30, 155
HphI GGTGA 4 cut(s) 257, 587, 1133, 1720
Hpy166II GTNNAC 9 cut(s) 265, 367, 670, 796, 952, 1154, 1510, 1693, 1717
Hpy188III TCNNGA 3 cut(s) 179, 308, 419
Hpy8I GTNNAC 9 cut(s) 265, 367, 670, 796, 952, 1154, 1510, 1693, 1717
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 4 cut(s) 508, 679, 1315, 1641
HpyCH4III ACNGT 8 cut(s) 371, 395, 593, 634, 859, 1019, 1387, 1468
HpyCH4IV ACGT 2 cut(s) 542, 546
HpyCH4V TGCA 6 cut(s) 110, 199, 443, 644, 844, 1445
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 9 cut(s) 180, 241, 346, 492, 504, 533, 1068, 1536, 1546
HpySE526I ACGT 2 cut(s) 542, 546
Hsp92II CATG 6 cut(s) 238, 725, 1196, 1277, 1339, 1686
KspAI GTTAAC 1 cut(s) 367
KspI CCGCGG 1 cut(s) 999
Kzo9I GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
LmnI GCTCC 2 cut(s) 962, 1647
Lsp1109I GCAGC 2 cut(s) 94, 828
LweI GCATC 5 cut(s) 439, 452, 933, 1351, 1567
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 542, 546
MaeIII GTNAC 4 cut(s) 275, 593, 1121, 1324
MalI GATC 6 cut(s) 188, 361, 417, 780, 1137, 1463
MboI GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 2 cut(s) 359, 1135
MlsI TGGCCA 1 cut(s) 1191
MluCI AATT 6 cut(s) 15, 212, 600, 714, 761, 1351
MluNI TGGCCA 1 cut(s) 1191
MlyI GAGTC 7 cut(s) 53, 160, 323, 338, 1190, 1505, 1673
Mox20I TGGCCA 1 cut(s) 1191
MscI TGGCCA 1 cut(s) 1191
MseI TTAA 2 cut(s) 366, 876
MslI CAYNNNNRTG 2 cut(s) 83, 726
Msp20I TGGCCA 1 cut(s) 1191
MspA1I CMGCKG 2 cut(s) 998, 1067
MspI CCGG 2 cut(s) 30, 155
MspR9I CCNGG 3 cut(s) 30, 269, 1089
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 2 cut(s) 269, 1089
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 1335
NdeII GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
NlaIII CATG 6 cut(s) 238, 725, 1196, 1277, 1339, 1686
NlaIV GGNNCC 1 cut(s) 1137
NmuCI GTSAC 3 cut(s) 593, 1121, 1324
NspI RCATGY 1 cut(s) 725
PctI GAATGC 1 cut(s) 646
PfeI GAWTC 5 cut(s) 320, 458, 464, 557, 710
Pfl23II CGTACG 1 cut(s) 543
PkrI GCNGC 3 cut(s) 109, 522, 843
PleI GAGTC 7 cut(s) 53, 159, 322, 338, 1190, 1505, 1673
PpsI GAGTC 7 cut(s) 53, 159, 322, 338, 1190, 1505, 1673
Ppu21I YACGTR 1 cut(s) 547
PshAI GACNNNNGTC 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 267, 1087
PspGI CCWGG 2 cut(s) 267, 1087
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 1137
PspPI GGNCC 3 cut(s) 251, 766, 1526
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 2 cut(s) 461, 914
PsuI RGATCY 2 cut(s) 359, 1135
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 3 cut(s) 545, 735, 1081
RsaNI GTAC 3 cut(s) 544, 734, 1080
RseI CAYNNNNRTG 2 cut(s) 83, 726
SacII CCGCGG 1 cut(s) 999
SaqAI TTAA 2 cut(s) 366, 876
SatI GCNGC 3 cut(s) 108, 521, 842
Sau3AI GATC 6 cut(s) 186, 359, 415, 778, 1135, 1461
Sau96I GGNCC 3 cut(s) 251, 766, 1526
SchI GAGTC 7 cut(s) 53, 160, 323, 338, 1190, 1505, 1673
ScrFI CCNGG 3 cut(s) 30, 269, 1089
SfaNI GCATC 5 cut(s) 439, 452, 933, 1351, 1567
SfcI CTRYAG 2 cut(s) 453, 842
Sfr303I CCGCGG 1 cut(s) 999
SgrBI CCGCGG 1 cut(s) 999
SinI GGWCC 3 cut(s) 251, 766, 1526
SmiMI CAYNNNNRTG 2 cut(s) 83, 726
SnaBI TACGTA 1 cut(s) 547
Sse9I AATT 6 cut(s) 15, 212, 600, 714, 761, 1351
SsiI CCGC 5 cut(s) 520, 996, 998, 1048, 1543
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 28, 267, 1087
StyI CCWWGG 3 cut(s) 1009, 1173, 1335
TaaI ACNGT 8 cut(s) 371, 395, 593, 634, 859, 1019, 1387, 1468
TaiI ACGT 2 cut(s) 545, 549
TaqI TCGA 2 cut(s) 189, 1359
TasI AATT 6 cut(s) 15, 212, 600, 714, 761, 1351
TatI WGTACW 2 cut(s) 733, 1079
TauI GCSGC 1 cut(s) 523
TfiI GAWTC 5 cut(s) 320, 458, 464, 557, 710
Tru1I TTAA 2 cut(s) 366, 876
Tru9I TTAA 2 cut(s) 366, 876
TscAI CASTG 7 cut(s) 137, 376, 637, 696, 1024, 1399, 1471
TseFI GTSAC 3 cut(s) 593, 1121, 1324
TseI GCWGC 2 cut(s) 107, 841
Tsp45I GTSAC 3 cut(s) 593, 1121, 1324
TspDTI ATGAA 5 cut(s) 243, 903, 1230, 1239, 1460
TspRI CASTG 7 cut(s) 137, 376, 637, 696, 1024, 1399, 1471
VpaK11BI GGWCC 3 cut(s) 251, 766, 1526
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 1680
XmiI GTMKAC 2 cut(s) 795, 1692
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.