RchiOBHm_Chr1g0350621

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002773
Physical Location & Seq
Forward (+)
43756411 .. 43759614
3204 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGAAACCTTTGTTCCTTATGGAAACGATGACCTTGATAGATGTTGTGGACTTATCTAGTGATGATGAACTTGGAGAGGTGGATGTGAAACCTGTTAAGCTGGAGCTAGATGTTGTTGGAAGACATAAAGAGAAGTGTAAAGCTCAACCTGTGAAGAATAAATTGTCAAAAACCCAACGTACTATACAAGATTCTGAAGAAAATAGGAGCTCAAATGCTTTAAGTACTGGTCACAGTAGCTCCAGTATATTAGACCAAGGGCAGTCTCCTGTGGATAACACAAGCATCCCTTCGGCATCACCTAAATGTCCAGCACCACTTTGTCGGCAATTTTGGAAAGCTGGGAACTACAATGATGGCATCCGTTCTAAAGCTACATTTCAAAGTATTCTACTATATATCTTCGGTTCTAACTTGAGGGGTTTGCAAGTGAATTTTACTAATATTGGTGATGGAAAAAACTATGTACATGTCCACCCCATGTTTCTTCACTCAAATGCCACCTCACATAAATGGGCATTCGGTGCTATAGCAGAACTCCTTGACAATGCAGTTGATGAGATCCAAAATGGGGCCACTTTTGTCAATGTAGATAAAATCTCAAATCCAAAGGATGGAAGCCCAGCATTGTTAATTCAAGATGATGGTAACGGCATGGATCCTGAAGCTATGCGCCGCTGCATGAGTTTTGGGTTTTCAGATAAGAAGTCGAAATCAGTCATTGGCCAATCCTTCTTCCCCTGTCATCTGGAGGTGGAAGAGCAAAGGAGTGTGGCAGTTATGCGGACTTTGACTCAAAGCATTGGTCTTCTCTCTTACACGTTTTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

277

Amino Acids

30.49

Weight (kDa)

6.17

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 174 - 238 6.5e-08 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 614
AciI CCGC 2 cut(s) 676, 784
AclWI GGATC 3 cut(s) 556, 653, 666
AcoI YGGCCR 1 cut(s) 724
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 2 cut(s) 216, 684
AfaI GTAC 3 cut(s) 181, 226, 468
AfiI CCNNNNNNNGG 2 cut(s) 571, 614
AflIII ACRYGT 2 cut(s) 469, 819
AgsI TTSAA 2 cut(s) 383, 638
AluBI AGCT 8 cut(s) 100, 106, 143, 210, 240, 341, 374, 668
AluI AGCT 8 cut(s) 100, 106, 143, 210, 240, 341, 374, 668
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 3 cut(s) 556, 653, 666
AoxI GGCC 2 cut(s) 573, 724
ApeKI GCWGC 1 cut(s) 678
ApoI RAATTY 1 cut(s) 433
ArsI GACNNNNNNTTYG 2 cut(s) 790, 822
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 1 cut(s) 573
AsuHPI GGTGA 2 cut(s) 291, 461
BalI TGGCCA 1 cut(s) 726
BamHI GGATCC 1 cut(s) 658
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 2 cut(s) 127, 800
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 665
BccI CCATC 4 cut(s) 350, 446, 608, 638
BceAI ACGGC 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 57, 107
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 2 cut(s) 676, 679
BlsI GCNGC 2 cut(s) 677, 680
BmcAI AGTACT 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 573
BmiI GGNNCC 2 cut(s) 574, 660
BmsI GCATC 3 cut(s) 294, 305, 369
BpiI GAAGAC 2 cut(s) 127, 800
BpmI CTGGAG 3 cut(s) 122, 226, 770
BpuEI CTTGAG 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 571, 614
Bse1I ACTGG 2 cut(s) 232, 243
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 4 cut(s) 88, 285, 360, 619
BseLI CCNNNNNNNGG 2 cut(s) 571, 614
BseNI ACTGG 2 cut(s) 232, 243
BseXI GCAGC 1 cut(s) 665
BseYI CCCAGC 2 cut(s) 341, 622
BshFI GGCC 2 cut(s) 575, 726
BsiHKAI GWGCWC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 571, 614
BsmAI GTCTC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 2 cut(s) 575, 726
Bsp1286I GDGCHC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 2 cut(s) 561, 658
BspACI CCGC 2 cut(s) 676, 784
BspANI GGCC 2 cut(s) 575, 726
BspLI GGNNCC 2 cut(s) 574, 660
BspPI GGATC 3 cut(s) 556, 653, 666
BspQI GCTCTTC 1 cut(s) 753
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 2 cut(s) 232, 243
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 561, 658
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 466
BstF5I GGATG 4 cut(s) 88, 285, 360, 619
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 2 cut(s) 564, 661
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 561, 658
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 473
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 665
BstV2I GAAGAC 2 cut(s) 127, 800
BstX2I RGATCY 2 cut(s) 561, 658
BstYI RGATCY 2 cut(s) 561, 658
BsuRI GGCC 2 cut(s) 575, 726
BtsCI GGATG 4 cut(s) 88, 285, 360, 619
CfoI GCGC 1 cut(s) 675
Cfr13I GGNCC 1 cut(s) 573
Csp6I GTAC 3 cut(s) 180, 225, 467
CviAII CATG 5 cut(s) 470, 481, 655, 682, 831
CviQI GTAC 3 cut(s) 180, 225, 467
DpnI GATC 2 cut(s) 563, 660
DpnII GATC 2 cut(s) 561, 658
EaeI YGGCCR 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 216, 684
EcoICRI GAGCTC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 5 cut(s) 473, 484, 658, 685, 834
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FatI CATG 5 cut(s) 469, 480, 654, 681, 830
Fnu4HI GCNGC 2 cut(s) 676, 679
FokI GGATG 4 cut(s) 95, 272, 347, 626
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 676, 679
FspBI CTAG 2 cut(s) 57, 107
GlaI GCGC 1 cut(s) 674
GluI GCNGC 2 cut(s) 676, 679
GsaI CCCAGC 2 cut(s) 345, 626
GsuI CTGGAG 3 cut(s) 122, 226, 770
HaeIII GGCC 2 cut(s) 575, 726
HhaI GCGC 1 cut(s) 675
Hin1II CATG 5 cut(s) 473, 484, 658, 685, 834
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HinfI GANTC 2 cut(s) 191, 793
HphI GGTGA 2 cut(s) 291, 461
Hpy166II GTNNAC 2 cut(s) 49, 475
Hpy188I TCNGA 2 cut(s) 196, 700
Hpy188III TCNNGA 3 cut(s) 638, 662, 749
Hpy8I GTNNAC 2 cut(s) 49, 475
HpyAV CCTTC 2 cut(s) 300, 742
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 2 cut(s) 178, 821
HpyCH4V TGCA 3 cut(s) 427, 551, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpySE526I ACGT 2 cut(s) 178, 821
Hsp92II CATG 5 cut(s) 473, 484, 658, 685, 834
HspAI GCGC 1 cut(s) 673
Kzo9I GATC 2 cut(s) 561, 658
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 3 cut(s) 103, 207, 245
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 3 cut(s) 294, 305, 369
MaeI CTAG 2 cut(s) 57, 107
MaeII ACGT 2 cut(s) 178, 821
MaeIII GTNAC 2 cut(s) 230, 647
MalI GATC 2 cut(s) 563, 660
MboI GATC 2 cut(s) 561, 658
MboII GAAGA 8 cut(s) 132, 166, 209, 394, 479, 727, 770, 800
MflI RGATCY 2 cut(s) 561, 658
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 726
MluCI AATT 4 cut(s) 161, 329, 433, 633
MluNI TGGCCA 1 cut(s) 726
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 4 cut(s) 70, 411, 514, 745
Mox20I TGGCCA 1 cut(s) 726
MscI TGGCCA 1 cut(s) 726
MseI TTAA 3 cut(s) 96, 221, 632
MslI CAYNNNNRTG 3 cut(s) 304, 495, 511
Msp20I TGGCCA 1 cut(s) 726
MspA1I CMGCKG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 518
MwoI GCNNNNNNNGC 1 cut(s) 524
NdeII GATC 2 cut(s) 561, 658
NlaIII CATG 5 cut(s) 473, 484, 658, 685, 834
NlaIV GGNNCC 2 cut(s) 574, 660
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 473
PciI ACATGT 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 753
PctI GAATGC 1 cut(s) 518
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 2 cut(s) 677, 680
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PscI ACATGT 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 212
PspFI CCCAGC 2 cut(s) 341, 622
PspN4I GGNNCC 2 cut(s) 574, 660
PspPI GGNCC 1 cut(s) 573
PsuI RGATCY 2 cut(s) 561, 658
RsaI GTAC 3 cut(s) 181, 226, 468
RsaNI GTAC 3 cut(s) 180, 225, 467
RseI CAYNNNNRTG 3 cut(s) 304, 495, 511
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 3 cut(s) 96, 221, 632
SatI GCNGC 2 cut(s) 676, 679
Sau3AI GATC 2 cut(s) 561, 658
Sau96I GGNCC 1 cut(s) 573
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 1 cut(s) 787
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 3 cut(s) 294, 305, 369
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 3 cut(s) 304, 495, 511
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 4 cut(s) 161, 329, 433, 633
SsiI CCGC 2 cut(s) 676, 784
SspI AATATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 57, 107
SstI GAGCTC 1 cut(s) 212
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 2 cut(s) 181, 824
TaqI TCGA 1 cut(s) 710
TasI AATT 4 cut(s) 161, 329, 433, 633
TatI WGTACW 2 cut(s) 224, 466
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 3 cut(s) 96, 221, 632
Tru9I TTAA 3 cut(s) 96, 221, 632
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 678
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 17, 81
TspGWI ACGGA 1 cut(s) 353
Van91I CCANNNNNTGG 1 cut(s) 614
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 473
XspI CTAG 2 cut(s) 57, 107
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.