Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002773

Physical Location & Seq

Genomic Coordinates Forward (+)

19890861 .. 19893035

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0200800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCGGTGGCGAAGACGACAAGAAGAGAGGTATATCCACCAGTGGTCATCCTCCTCCTTCGGCTCCCGAGTATGGAACCTTCCAAGGCGTCGCCAACTATCCCCCTCCACCGCCGCCCGGCGGCTTCCCTCAACCAGTTCCTCCGCCGGGAGCCACTGACCCACCACCTCCGTACTACCCTCAGGGCTATCAGACCGTTCCCGGTTATGCAGTTGCTGAGGGAAGACCTGTAAGACAGCGTCGCCTGCCTTGTTGTGGTTTGGGTCTCGGCTGGTGCCTGTTTATCATTGGTTTCTTCCTTGCTTCTATTCCATGGTATGTTGGGGCGATTATTCTAGTTTGTTCCAGGAATAGGATGGACTACCGAGAGAAACCAGGATATATCGCTTGCTCAGTTGCCGCTATTCTTGCTACAATTGCTATTGTCCTTGGTGCCACAAAGGGAAGTGATGCCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

153

Amino Acids

16.19

Weight (kDa)

8.63

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19100
fragaria_vesca	FvH4_5g28960 FvH4_5g28960 FvH4_5g28960 FvH4_5g28960
malus_domestica	MD07G1122300.v1.1
prunus_persica	Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1 Prupe.6G157300_v2.0.a1
pyrus_communis	pycom07g11070
rosa_chinensis	RchiOBHm_Chr1g0350621 RchiOBHm_Chr5g0042471
rosa_laevigata	RLG00000028467 RLG00000034131
rosa_multiflora	Rmu_co8440237.1_g000001 Rmu_sc0017081.1_g000007 Rmu_ssc0000343.1_g000032
rosa_roxburghii	Rroxscaffold_1G00038160 Rroxscaffold_4G00304660
rosa_rugosa	Rorug01G0212800 Rorug01G0212900 Rorug05G0200600 Rorug05G0200700.1 Rorug05G0200800 Rorug05G0200900
rosa_samantha	Rh1BG195900 Rh1BG196200 Rh1DG223900 Rh1DG224200 Rh5AG286700 Rh5BG291300 Rh5CG323400 Rh5DG301000
rosa_wichuraiana	Rw1G019660 Rw5G026630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	276, 434
AciI	CCGC	6 cut(s)	6, 113, 116, 123, 146, 402
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	6 cut(s)	74, 119, 122, 149, 257, 354
AjnI	CCWGG	3 cut(s)	347, 376, 455
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	68
AsuC2I	CCSGG	3 cut(s)	120, 150, 204
AvaI	CYCGRG	1 cut(s)	68
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	2 cut(s)	276, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	2 cut(s)	21, 232
BbvCI	CCTCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	3 cut(s)	349, 378, 457
BcnI	CCSGG	3 cut(s)	120, 150, 204
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	3 cut(s)	116, 124, 402
BlsI	GCNGC	3 cut(s)	117, 125, 403
Bme1390I	CCNGG	6 cut(s)	120, 150, 204, 349, 378, 457
BmeT110I	CYCGRG	1 cut(s)	68
BmiI	GGNNCC	5 cut(s)	66, 79, 154, 278, 436
BmrFI	CCNGG	6 cut(s)	120, 150, 204, 349, 378, 457
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	2 cut(s)	21, 232
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	3 cut(s)	120, 150, 204
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	85, 314, 430
Bsc4I	CCNNNNNNNGG	6 cut(s)	74, 119, 122, 149, 257, 354
Bse1I	ACTGG	2 cut(s)	42, 137
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	349, 378, 457
BseDI	CCNNGG	3 cut(s)	85, 314, 430
BseGI	GGATG	2 cut(s)	49, 363
BseLI	CCNNNNNNNGG	6 cut(s)	74, 119, 122, 149, 257, 354
BseMII	CTCAG	3 cut(s)	197, 210, 408
BseNI	ACTGG	2 cut(s)	42, 137
BseRI	GAGGAG	1 cut(s)	45
BshNI	GGYRCC	2 cut(s)	276, 434
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	120, 149, 204
BslI	CCNNNNNNNGG	6 cut(s)	74, 119, 122, 149, 257, 354
BsmAI	GTCTC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	6 cut(s)	6, 113, 116, 123, 146, 402
BspCNI	CTCAG	3 cut(s)	196, 211, 407
BspLI	GGNNCC	5 cut(s)	66, 79, 154, 278, 436
BspT107I	GGYRCC	2 cut(s)	276, 434
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	42, 137
BssECI	CCNNGG	3 cut(s)	85, 314, 430
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	3 cut(s)	85, 314, 430
Bst2UI	CCWGG	3 cut(s)	349, 378, 457
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	248, 391
BstDEI	CTNAG	3 cut(s)	183, 219, 394
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	49, 363
BstMAI	GTCTC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 410, 419
BstNI	CCWGG	3 cut(s)	349, 378, 457
BstSCI	CCNGG	6 cut(s)	118, 148, 202, 347, 376, 455
BstV2I	GAAGAC	2 cut(s)	21, 232
Bsu36I	CCTNAGG	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	49, 363
BtsIMutI	CAGTG	2 cut(s)	49, 156
Cac8I	GCNNGC	2 cut(s)	248, 391
CaiI	CAGNNNCTG	1 cut(s)	218
CseI	GACGC	2 cut(s)	79, 230
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	5 cut(s)	65, 126, 155, 189, 273
CviKI_1	RGCY	5 cut(s)	65, 126, 155, 189, 273
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	183, 219, 394
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	3 cut(s)	85, 314, 430
Eco31I	GGTCTC	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	3 cut(s)	347, 376, 455
EcoT14I	CCWWGG	3 cut(s)	85, 314, 430
ErhI	CCWWGG	3 cut(s)	85, 314, 430
FaeI	CATG	1 cut(s)	318
FaiI	YATR	6 cut(s)	35, 75, 210, 316, 321, 384
FatI	CATG	1 cut(s)	314
Fnu4HI	GCNGC	3 cut(s)	116, 124, 402
FokI	GGATG	2 cut(s)	36, 370
Fsp4HI	GCNGC	3 cut(s)	116, 124, 402
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	3 cut(s)	116, 124, 402
HapII	CCGG	3 cut(s)	120, 149, 204
HgaI	GACGC	2 cut(s)	79, 230
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	318
HpaII	CCGG	3 cut(s)	120, 149, 204
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	68
Hpy99I	CGWCG	2 cut(s)	95, 246
HpyAV	CCTTC	2 cut(s)	69, 91
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 410, 419
HpyF3I	CTNAG	3 cut(s)	183, 219, 394
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	70, 152
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	338
MboII	GAAGA	4 cut(s)	26, 37, 237, 289
MfeI	CAATTG	1 cut(s)	417
MluCI	AATT	1 cut(s)	417
MnlI	CCTC	9 cut(s)	23, 63, 66, 117, 141, 153, 180, 192, 214
MspI	CCGG	3 cut(s)	120, 149, 204
MspR9I	CCNGG	6 cut(s)	120, 150, 204, 349, 378, 457
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	3 cut(s)	349, 378, 457
MwoI	GCNNNNNNNGC	3 cut(s)	247, 410, 419
NciI	CCSGG	3 cut(s)	120, 150, 204
NcoI	CCATGG	1 cut(s)	314
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	5 cut(s)	66, 79, 154, 278, 436
NmeAIII	GCCGAG	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	117, 125, 403
Psp6I	CCWGG	3 cut(s)	347, 376, 455
PspGI	CCWGG	3 cut(s)	347, 376, 455
PspN4I	GGNNCC	5 cut(s)	66, 79, 154, 278, 436
PstNI	CAGNNNCTG	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	3 cut(s)	116, 124, 402
ScrFI	CCNGG	6 cut(s)	120, 150, 204, 349, 378, 457
SetI	ASST	4 cut(s)	34, 83, 172, 232
SfaNI	GCATC	1 cut(s)	442
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	6 cut(s)	6, 113, 116, 123, 146, 402
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	6 cut(s)	118, 148, 202, 347, 376, 455
StyI	CCWWGG	3 cut(s)	85, 314, 430
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	1 cut(s)	417
TauI	GCSGC	3 cut(s)	118, 126, 404
TscAI	CASTG	2 cut(s)	49, 163
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	2 cut(s)	49, 163
Tth111I	GACNNNGTC	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.