Rorug05G0200600

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002773
Physical Location & Seq
Forward (+)
19867677 .. 19868415
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0200600.1

Sequence Viewer

Length: 705 bp
ATGGCAGTTCACGATGATCCTCCTCCGGGCTACAGGTTTAGGCCTGACGCAGAACAACTACTTGTTCATTGTCTTCGTCCCAAACTCGATGGAGAAGGCTTTCCCCAAGGGCTTGTTCCTTTCTGCGATCTTTATGGAGATCAAGAACCATGGCAGATATGGGAAGCTTTCAAAGAATCATCAGTGAAAGACCAAGAAAGAGAAGACCTCTACTTCATTACCCAACACAAGAAGAAGTCTCCAAAGGTCTCGCGCAAAAGCCGAACAATCGGCAGTGGCACCTGGAAAGGCGACGACGGCGCCAAGAAAGTACTTGCTGCTTCTCGAAAGGTTATTGGCAAGAGAAAAAGATTTCATTACGAGAACGAGGGCTCGGGGCAAAACGGTCGCTGGCTCATGCACGAGTTTGAACTTGATGCATCTTTACTGCGAAACAAACAAAAAAATAGTAGGTCGGTGAAAAAGAACTCAGAAGGACTAGAGGATCGAGAAAAAGATGAGATGAGTTGCGACGGTGGTGATGATCAACAAGATGGAGAGCTTCATGATCATGAACCTGAGTTCGTTGAAGAAGAGACCAGTACTACTCAAAAACCAGGCGAACTTCGAAAATGTGTGACGGACTTTGAGGTATACCTAAAGGAACAGATTGCTGAACAGGCTATGAAAAAGAATGATCATAAAGATTCCCAGAAAATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

234

Amino Acids

27.04

Weight (kDa)

5.83

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 138 1.6e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 278, 299
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 253
AclWI GGATC 2 cut(s) 11, 492
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 2 cut(s) 312, 583
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 172, 410, 569
AjnI CCWGG 2 cut(s) 281, 595
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 167, 541
AluI AGCT 2 cut(s) 167, 541
Alw26I GTCTC 3 cut(s) 243, 253, 569
AlwI GGATC 2 cut(s) 11, 492
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 255, 302
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 469, 530
AsuII TTCGAA 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 373
BanI GGYRCC 2 cut(s) 278, 299
BanII GRGCYC 1 cut(s) 374
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 65, 210
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 83, 527
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 283, 597
BclI TGATCA 3 cut(s) 523, 547, 676
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 243, 253, 569
BfaI CTAG 2 cut(s) 479, 703
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 2 cut(s) 312, 583
Bme1390I CCNGG 3 cut(s) 27, 283, 597
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 280, 301
BmrFI CCNGG 3 cut(s) 27, 283, 597
BmsI GCATC 2 cut(s) 406, 428
BpiI GAAGAC 2 cut(s) 65, 210
BplI GAGNNNNNCTC 2 cut(s) 192, 224
Bpu14I TTCGAA 1 cut(s) 607
BpuMI CCSGG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 253, 569
BsaJI CCNNGG 2 cut(s) 106, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 579
BseBI CCWGG 2 cut(s) 283, 597
BseDI CCNNGG 2 cut(s) 106, 149
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 483, 549
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 2 cut(s) 278, 299
BsiEI CGRYCG 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 3 cut(s) 243, 253, 569
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 2 cut(s) 253, 569
BsoBI CYCGRG 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
Bsp19I CCATGG 1 cut(s) 149
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 482, 550
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 2 cut(s) 544, 550
BspLI GGNNCC 2 cut(s) 280, 301
BspPI GGATC 2 cut(s) 11, 492
BspT104I TTCGAA 1 cut(s) 607
BspT107I GGYRCC 2 cut(s) 278, 299
BspTNI GGTCTC 2 cut(s) 253, 569
BsrI ACTGG 1 cut(s) 579
BssECI CCNNGG 2 cut(s) 106, 149
BssMI GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
BssNAI GTATAC 1 cut(s) 634
BssNI GRCGYC 1 cut(s) 300
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 106, 149
Bst1107I GTATAC 1 cut(s) 634
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 283, 597
Bst4CI ACNGT 2 cut(s) 386, 515
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 300
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 469, 558
BstDSI CCRYGG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 255, 302
BstKTI GATC 7 cut(s) 19, 130, 142, 487, 526, 550, 679
BstMAI GTCTC 3 cut(s) 243, 253, 569
BstMBI GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 2 cut(s) 297, 659
BstNI CCWGG 2 cut(s) 283, 597
BstSCI CCNGG 3 cut(s) 25, 281, 595
BstSFI CTRYAG 1 cut(s) 31
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 2 cut(s) 65, 210
BstZ17I GTATAC 1 cut(s) 634
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 189, 280
Cac8I GCNNGC 1 cut(s) 392
CciI TCATGA 2 cut(s) 544, 550
CfoI GCGC 2 cut(s) 255, 302
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 311, 582
CviAII CATG 4 cut(s) 150, 397, 545, 551
CviQI GTAC 2 cut(s) 311, 582
DdeI CTNAG 2 cut(s) 469, 558
DinI GGCGCC 1 cut(s) 301
DpnI GATC 7 cut(s) 18, 129, 141, 486, 525, 549, 678
DpnII GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco130I CCWWGG 2 cut(s) 106, 149
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 374
Eco31I GGTCTC 2 cut(s) 253, 569
Eco88I CYCGRG 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 281, 595
EcoT14I CCWWGG 2 cut(s) 106, 149
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 374
EgeI GGCGCC 1 cut(s) 301
EheI GGCGCC 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 106, 149
FaeI CATG 4 cut(s) 153, 400, 548, 554
FaiI YATR 9 cut(s) 135, 151, 160, 398, 546, 552, 634, 665, 681
FaqI GGGAC 1 cut(s) 63
FatI CATG 4 cut(s) 149, 396, 544, 550
FbaI TGATCA 3 cut(s) 523, 547, 676
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 1 cut(s) 318
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 479, 703
GlaI GCGC 2 cut(s) 254, 301
GluI GCNGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 255, 302
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 4 cut(s) 153, 400, 548, 554
Hin6I GCGC 2 cut(s) 253, 300
HinP1I GCGC 2 cut(s) 253, 300
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 176, 686
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 469, 530
Hpy166II GTNNAC 2 cut(s) 10, 634
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 6 cut(s) 11, 143, 324, 488, 545, 551
Hpy8I GTNNAC 2 cut(s) 10, 634
Hpy99I CGWCG 3 cut(s) 296, 299, 515
HpyAV CCTTC 2 cut(s) 89, 467
HpyCH4III ACNGT 2 cut(s) 386, 515
HpyCH4V TGCA 2 cut(s) 400, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 659
HpyF3I CTNAG 2 cut(s) 469, 558
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 4 cut(s) 153, 400, 548, 554
HspAI GCGC 2 cut(s) 253, 300
KasI GGCGCC 1 cut(s) 299
Ksp22I TGATCA 3 cut(s) 523, 547, 676
Kzo9I GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 406, 428
MaeI CTAG 2 cut(s) 479, 703
MaeIII GTNAC 1 cut(s) 616
MalI GATC 7 cut(s) 18, 129, 141, 486, 525, 549, 678
MboI GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
MboII GAAGA 5 cut(s) 65, 215, 244, 581, 584
MhlI GDGCHC 1 cut(s) 374
Mly113I GGCGCC 1 cut(s) 300
MnlI CCTC 6 cut(s) 30, 33, 218, 361, 475, 622
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 27, 283, 597
MvaI CCWGG 2 cut(s) 283, 597
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 297, 659
NarI GGCGCC 1 cut(s) 300
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 149
NdeII GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
NlaIII CATG 4 cut(s) 153, 400, 548, 554
NlaIV GGNNCC 2 cut(s) 280, 301
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 421
NspV TTCGAA 1 cut(s) 607
PagI TCATGA 2 cut(s) 544, 550
PceI AGGCCT 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 176, 686
PkrI GCNGC 1 cut(s) 319
PluTI GGCGCC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 281, 595
PspGI CCWGG 2 cut(s) 281, 595
PspN4I GGNNCC 2 cut(s) 280, 301
RsaI GTAC 2 cut(s) 312, 583
RsaNI GTAC 2 cut(s) 311, 582
RseI CAYNNNNRTG 1 cut(s) 549
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 7 cut(s) 16, 127, 139, 484, 523, 547, 676
ScaI AGTACT 2 cut(s) 312, 583
ScrFI CCNGG 3 cut(s) 27, 283, 597
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 2 cut(s) 406, 428
SfcI CTRYAG 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 301
SfuI TTCGAA 1 cut(s) 607
SmiMI CAYNNNNRTG 1 cut(s) 549
SseBI AGGCCT 1 cut(s) 43
SspDI GGCGCC 1 cut(s) 299
SspMI CTAG 2 cut(s) 479, 703
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 25, 281, 595
StyI CCWWGG 2 cut(s) 106, 149
TaaI ACNGT 2 cut(s) 386, 515
TaqI TCGA 4 cut(s) 87, 325, 487, 607
TatI WGTACW 2 cut(s) 310, 581
TfiI GAWTC 2 cut(s) 176, 686
TscAI CASTG 2 cut(s) 189, 280
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 6 cut(s) 56, 205, 344, 533, 567, 680
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 2 cut(s) 189, 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 479, 703
ZrmI AGTACT 2 cut(s) 312, 583
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.